9YXA | pdb_00009yxa

BtCoV SL5 with SL5c truncated

PDB DOI: https://doi.org/10.2210/pdb9YXA/pdb
EM Map EMD-73601: EMDB EMDataResource

Classification: RNA
Organism(s): Pipistrellus bat coronavirus HKU5
Mutation(s): No

Deposited: 2025-10-26 Released: 2026-08-26
Deposition Author(s): Kretsch, R.C., Xu, L., Chiu, W., Das, R.
Funding Organization(s): National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 9.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Assessment of nucleic acid structure prediction in CASP16

Kretsch, R.C., Hummer, A.M., He, S., Yuan, R., Zhang, J., Karagianes, T., Cong, Q., Kryshtafovych, A., Das, R.

To be published.

Macromolecule Content

Total Structure Weight: 40.91 kDa
Atom Count: 2,707
Modeled Residue Count: 127
Deposited Residue Count: 127
Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 1
RNA (127-MER)	A	127	Pipistrellus bat coronavirus HKU5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 9.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-08-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	2330652

Revision History (Full details and data files)

Version 1.0: 2026-08-26
Type: Initial release