9YGJ | pdb_00009ygj

Plasmodium falciparum moving junction staple - PfAMA1, PfRON2, PfRON4, PfRON5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9YGJ

This is version 1.1 of the entry. See complete history

Literature

Structural basis for host membrane binding and remodeling by invading malaria parasites.

Haile, M.T.Kaxiras, D.A.Zhen, J.Lee, C.L.Jiang, B.Small-Saunders, J.L.Ho, C.M.

(2026) Cell 

  • DOI: https://doi.org/10.1016/j.cell.2026.06.012
  • Primary Citation Related Structures: 
    9YGJ

  • PubMed Abstract: 

    The Plasmodium moving junction is central to malarial host-cell invasion, and yet its function remains unclear. Here, we determine the endogenous structure of the basic repeating unit of the moving junction, purified directly from invasion-stalled Plasmodium falciparum parasites, revealing a sailboat-shaped 1:1:1:1 assembly of apical membrane antigen 1 (PfAMA1) and rhoptry neck proteins 2, 4, and 5 (PfRON2, PfRON4, and PfRON5). We observe two PfRON2 transmembrane helices that anchor the complex in the red blood cell (RBC) membrane and display an extracellular handle for PfAMA1 binding. PfAMA1 directly contacts the RBC membrane, strengthening the connection. PfRON2/4/5 form a large, basic platform inside the RBC that electrostatically engages the RBC membrane and wedges seven amphipathic helices deep into the bilayer, suggesting an active role in host-membrane remodeling. We then leverage the native membrane context revealed by our structure, along with recent advances in computational protein design, to enable the rational design of a small protein binder that inhibits invasion.


  • Organizational Affiliation
    • Department of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY, USA.

Macromolecule Content 

  • Total Structure Weight: 591.58 kDa 
  • Atom Count: 25,105 
  • Modeled Residue Count: 3,087 
  • Deposited Residue Count: 5,168 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Rhoptry neck protein 22,189Plasmodium falciparum NF54Mutation(s): 0 
UniProt
Find proteins for A0A2I0C357 (Plasmodium falciparum (isolate NF54))
Explore A0A2I0C357 
Go to UniProtKB:  A0A2I0C357
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2I0C357
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Rhoptry neck protein 41,201Plasmodium falciparum NF54Mutation(s): 0 
UniProt
Find proteins for A0A2I0C0S7 (Plasmodium falciparum (isolate NF54))
Explore A0A2I0C0S7 
Go to UniProtKB:  A0A2I0C0S7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2I0C0S7
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Rhoptry neck protein 51,156Plasmodium falciparum NF54Mutation(s): 0 
UniProt
Find proteins for A0A2I0BXF6 (Plasmodium falciparum (isolate NF54))
Explore A0A2I0BXF6 
Go to UniProtKB:  A0A2I0BXF6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2I0BXF6
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Apical membrane antigen 1622Plasmodium falciparum NF54Mutation(s): 0 
UniProt
Find proteins for W7JSP8 (Plasmodium falciparum (isolate NF54))
Explore W7JSP8 
Go to UniProtKB:  W7JSP8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW7JSP8
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC4

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited StatesDP5OD029613

Revision History  (Full details and data files)

  • Version 1.0: 2026-07-01
    Type: Initial release
  • Version 1.1: 2026-07-15
    Changes: Data collection, Database references