9Y0H | pdb_00009y0h

Insulin Degrading Enzyme Time-resolved O/O state

PDB DOI: https://doi.org/10.2210/pdb9Y0H/pdb
EM Map EMD-72393: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2025-08-28 Released: 2026-05-06
Deposition Author(s): Mancl, J.M., Tang, W.J.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9Y0H

This is version 1.0 of the entry. See complete history.

Literature

Characterization and modulation of human insulin degrading enzyme conformational dynamics to control enzyme activity

Mancl, J.M., Liang, W.G., Wei, H., Carragher, B., Potter, C.S., Tang, W.J.

(2025) Elife

DOI: https://doi.org/10.7554/eLife.105761.1

Macromolecule Content

Total Structure Weight: 234.14 kDa
Atom Count: 15,412
Modeled Residue Count: 1,888
Deposited Residue Count: 2,022
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cysteine-free Insulin-degrading enzyme	A, B	1,011	Homo sapiens	Mutation(s): 13 Gene Names: IDE EC: 3.4.24.56
UniProt & NIH Common Fund Data Resources
Find proteins for P14735 (Homo sapiens) Explore P14735 Go to UniProtKB: P14735
PHAROS: P14735 GTEx: ENSG00000119912
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14735
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 5.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	5.0.0

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2026-05-06
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.