9XOF | pdb_00009xof

Crystal structure of WTAP 150-245

PDB DOI: https://doi.org/10.2210/pdb9XOF/pdb

Classification: CELL CYCLE
Organism(s): Homo sapiens
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2025-11-13 Released: 2026-05-27
Deposition Author(s): Zhang, S., Chen, J.S., Wang, C.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.79 Å
R-Value Free:
0.270 (Depositor), 0.265 (DCC)
R-Value Work:
0.216 (Depositor), 0.216 (DCC)
R-Value Observed:
0.219 (Depositor)

Starting Model: in silico
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This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of WTAP 150-245

Chen, J.S., Li, J.C., Zhang, S., Wang, C.

To be published.

Macromolecule Content

Total Structure Weight: 92.84 kDa
Atom Count: 5,864
Modeled Residue Count: 738
Deposited Residue Count: 800
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pre-mRNA-splicing regulator WTAP	A B C D E [auth G] A, B, C, D, E [auth G], F [auth H], G [auth I], H [auth J]	100	Homo sapiens	Mutation(s): 0 Gene Names: WTAP, KIAA0105
UniProt & NIH Common Fund Data Resources
Find proteins for Q15007 (Homo sapiens) Explore Q15007 Go to UniProtKB: Q15007
PHAROS: Q15007 GTEx: ENSG00000146457
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q15007
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A B C D E [auth G] A, B, C, D, E [auth G], F [auth H], G [auth I], H [auth J]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.79 Å
R-Value Free: 0.270 (Depositor), 0.265 (DCC)
R-Value Work: 0.216 (Depositor), 0.216 (DCC)
R-Value Observed: 0.219 (Depositor)

Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.621	α = 90
b = 104.618	β = 90.22
c = 101.601	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
DENZO	data reduction
PDB_EXTRACT	data extraction
AutoSol	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-27

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2026-05-27
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.