9WZ8 | pdb_00009wz8

Full-length ASC-GFP PYD-filament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.14 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Atomic mechanisms of full-length ASC-mediated inflammasome assembly.

Xue, D.Ni, F.Liu, S.Yan, H.Luo, Z.Fu, G.Wang, Q.Ma, J.

(2025) Nat Commun 16: 10564-10564

  • DOI: https://doi.org/10.1038/s41467-025-65578-2
  • Primary Citation of Related Structures:  
    9WZ4, 9WZ5, 9WZ6, 9WZ7, 9WZ8, 9WZB, 9WZC, 9WZD, 9WZG, 9WZH, 9WZI

  • PubMed Abstract: 

    ASC (Apoptosis-associated Speck-like protein containing a CARD) is a key adaptor protein that assembles inflammasomes by linking sensors such as NLRP3 to effectors like Caspase-1 via its PYD and CARD Death Domains. Due to ASC's propensity to self-aggregate, most high-resolution structural studies focused on isolated PYD or CARD domains, leaving the atomic basis of full-length ASC assembly unknown. Here we determine atomic-resolution cryo-EM structures of PYD and CARD filaments from full-length ASC, revealing characteristic multitrack bundles composed of alternating ASC PYD and ASC CARD filaments that expose multiple interfaces for flexible assembly and efficient signaling. We further show that Caspase-1 filaments nucleate specifically from the B-end of ASC CARD filaments, and that the interdomain linker modulates bundle formation. The ASC isoform ASCb, with a four-residue linker, adopts a distinct architecture, correlating with reduced Caspase-1 activation efficiency. In ASC ⁻/⁻ THP-1 cells, only wild-type ASC, not interface-disrupting mutants, restored ASC speck formation and Caspase-1 activation, underscoring the requirement for intact multitrack bundles. Cryo-electron tomography captures snapshots of higher-order inflammasome structures. These findings collectively define the structural and functional principles by which ASC organizes inflammasomes to amplify immune signaling.


  • Organizational Affiliation
    • Multiscale Research Institute for Complex Systems, Fudan University, Shanghai, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Apoptosis-associated speck-like protein containing a CARD
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N
195Homo sapiensMutation(s): 0 
Gene Names: PYCARDASCCARD5TMS1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9ULZ3 (Homo sapiens)
Explore Q9ULZ3 
Go to UniProtKB:  Q9ULZ3
PHAROS:  Q9ULZ3
GTEx:  ENSG00000103490 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9ULZ3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.14 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2_4158
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentChinaNational Key Research and Development Program of China (No. 2024YFA1307502)
Other governmentChinaScience and Technology Innovation Plan of Shanghai Science and Technology Commission (No. 23JS1400200)
Other governmentChinaResearch Fund for International Senior Scientists (No. W2431060)

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-10
    Type: Initial release