9WSZ | pdb_00009wsz

CryoEM structure of baseplate iris structure in the contracted AlgoCIS


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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Literature

Stepwise firing mechanism of an extracellular contractile injection system.

Xu, J.Ericson, C.F.Toenshoff, E.R.Pilhofer, M.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-72240-y
  • Primary Citation Related Structures: 
    9WSZ, 9WT0, 9WT1

  • PubMed Abstract: 

    Contractile injection systems (CISs) mediate cell-cell interactions and are widespread among bacteria and archaea. These phage tail-like macromolecular machines puncture their target by a tube that is propelled by a contractile sheath. The mechanism underlying CIS firing, which starts with target binding and ends with sheath contraction, remains unclear. Here, we investigate the extracellular CIS from Algoriphagus machipongonensis (AlgoCIS) by a multimodal cryo-electron microscopy approach and structure-guided engineering, which allowed us to arrest AlgoCIS in multiple intermediate states of firing. Together with the post-firing structure, our data suggest a stepwise firing mechanism involving all structural modules: signal propagation starts with the binding of the tail-fibers, followed by opening of the cage, an expansion of the baseplate iris, and resulting in sheath contraction and the release of cap adaptor. Our study will serve as a framework for understanding the firing mechanism of diverse CISs and will facilitate the engineering of CISs for biomedical applications.


  • Organizational Affiliation
    • Department of Biology, Institute of Molecular Biology & Biophysics, Eidgenössische Technische Hochschule Zürich, Zürich, Switzerland. jingwei.xu@westlake.edu.cn.

Macromolecule Content 

  • Total Structure Weight: 1,355.58 kDa 
  • Atom Count: 92,154 
  • Modeled Residue Count: 11,406 
  • Deposited Residue Count: 11,832 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Baseplate protein Alg12922Algoriphagus machipongonensisMutation(s): 0 
UniProt
Find proteins for A3HTB3 (Algoriphagus machipongonensis)
Explore A3HTB3 
Go to UniProtKB:  A3HTB3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA3HTB3
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Baseplate protein J-like domain-containing protein1,050Algoriphagus machipongonensisMutation(s): 0 
UniProt
Find proteins for A3HTB4 (Algoriphagus machipongonensis)
Explore A3HTB4 
Go to UniProtKB:  A3HTB4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA3HTB4
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland31003A_179255
Swiss National Science FoundationSwitzerland310030_212592
European Research Council (ERC)European Union679209
European Research Council (ERC)European Union101000232

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-06
    Type: Initial release