9WSQ | pdb_00009wsq

Structure of dimeric mouse NLRP14-KDM2A-SKP1 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9WSQ

This is version 1.1 of the entry. See complete history

Literature

NLRP14 modulates the activity of E3 ubiquitin ligases during the oocyte-to-embryo transition.

Liu, S.Qi, Q.Chi, P.Jiao, H.Yan, L.Lu, Y.Zhang, R.Li, J.Ju, S.Han, Z.Zhang, Z.Liu, Q.Ou, G.Li, J.Chen, J.Wang, X.Li, L.Guo, L.Jiao, X.Hu, H.Jiang, Y.Deng, D.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-71519-4
  • Primary Citation Related Structures: 
    9LN6, 9WSQ, 9WSR

  • PubMed Abstract: 

    NLRP14 is an essential maternal factor for mammalian embryonic development. Maternal ablation of NLRP14 in mice impairs DNA demethylation and calcium homeostasis in zygotes, causing early embryonic arrest. However, the underlying biochemical events remain largely unknown. Here, we identified two binding partners (KDM2A and UHRF1) of NLRP14 and further solved structures of NLRP14-KDM2A-SKP1 and NLRP14-UHRF1. Structural analysis revealed that NLRP14 modulates the SKP1-CUL1-F-box (SCF) E3 ubiquitin ligase and the RING-type E3 ubiquitin ligase UHRF1 through two distinct mechanisms. Mechanistically, NLRP14 competitively inhibits KDM2A-mediated SCF assembly or allosterically inhibits the activity of UHRF1 by occupying the E2 ubiquitin-conjugating enzyme (UBE2D) binding site of the ubiquitin-like (UBL) domain. Deletion of NLRP14 in mice increases ubiquitination levels in oocytes during maturation and after fertilization. Collectively, our findings identify NLRP14 as a dual regulator that restrains E3 ubiquitin ligase-driven ubiquitination by limiting SCF complex assembly and attenuating UHRF1 activity. This regulatory role is required to prevent excessive protein ubiquitination and maintain proteostasis during the oocyte-to-embryo transition, thereby supporting early embryonic development. Our study uncovers maternal regulation of proteostasis in oocytes and suggests that dysregulating proteostasis is an important factor in the pathogenesis of reproductive disorders.


  • Organizational Affiliation
    • Department of Obstetrics and Gynecology, Key Laboratory of Birth Defects and Related Diseases of Women and Children of MOE, State Key Laboratory of Biotherapy, West China Second University Hospital, Sichuan University, Chengdu, China.

Macromolecule Content 

  • Total Structure Weight: 352.75 kDa 
  • Atom Count: 18,805 
  • Modeled Residue Count: 2,384 
  • Deposited Residue Count: 3,088 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Lysine-specific demethylase 2AA [auth B],
D [auth E]
358Mus musculusMutation(s): 0 
Gene Names: Kdm2aFbl11Fbxl11Jhdm1aKiaa1004
EC: 1.14.11.27
UniProt
Find proteins for P59997 (Mus musculus)
Explore P59997 
Go to UniProtKB:  P59997
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UniProt GroupP59997
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
S-phase kinase-associated protein 1B [auth C],
E [auth F]
174Mus musculusMutation(s): 0 
Gene Names: Skp1Skp1a
UniProt
Find proteins for Q9WTX5 (Mus musculus)
Explore Q9WTX5 
Go to UniProtKB:  Q9WTX5
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UniProt GroupQ9WTX5
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
NACHT, LRR and PYD domains-containing protein 14C [auth A],
F [auth D]
1,012Mus musculusMutation(s): 0 
Gene Names: Nlrp14Nalp14
UniProt & NIH Common Fund Data Resources
Find proteins for Q6B966 (Mus musculus)
Explore Q6B966 
Go to UniProtKB:  Q6B966
IMPC:  MGI:1924108
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UniProt GroupQ6B966
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31971132

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-18
    Type: Initial release
  • Version 1.1: 2026-04-22
    Changes: Data collection, Database references