9WLR | pdb_00009wlr

Cryo-EM structure of human papillomavirus type 45


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Structural and biochemical characterization of neutralizing antibodies targeting human papillomavirus type 45.

Jiang, Y.Wang, Z.Xu, Q.Zhang, S.Su, J.Sun, H.Zhang, C.Zhou, L.Li, T.Kong, Z.Yu, H.Zhang, J.Zheng, Q.Gu, Y.Xia, N.Li, S.

(2026) Structure 34: 588-598.e4

  • DOI: https://doi.org/10.1016/j.str.2026.01.012
  • Primary Citation Related Structures: 
    9VWZ, 9VZ8, 9WLR

  • PubMed Abstract: 

    Human papillomavirus type 45 (HPV45) is a high-risk genotype and the third most prevalent HPV type associated with cervical cancer worldwide, posing a significant public health concern. Although HPV45 is included in the commercial 9-valent HPV vaccine, its complete virion structure and the molecular basis of antibody-mediated neutralization remain incompletely understood. Here, we report the near-atomic resolution structure of the HPV45 pseudovirus (PsV45) determined by cryo-electron microscopy. We also isolated and structurally characterized several neutralizing monoclonal antibodies (nAbs) targeting PsV45. Our analysis reveals two distinct neutralizing epitopes on PsV45, and these nAbs likely neutralize the virus by a common mechanism involving the inhibition of viral attachment, despite differences in their binding interfaces. Biochemical assays confirmed that antibodies with non-overlapping binding modes can engage PsV45 simultaneously, indicating potential for synergistic combinations. These findings elucidate the structural basis of HPV45 type specificity and provide insights into HPV neutralization mechanisms.


  • Organizational Affiliation
    • State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Life Science, School of Public Health, Xiamen University, Fujian 361102, China; National Institute of Diagnostics and Vaccine Development in Infectious Diseases, National Innovation Platform for Industry-Education Integration in Vaccine Research, Xiamen University, Fujian 361102, China.

Macromolecule Content 

  • Total Structure Weight: 344.28 kDa 
  • Atom Count: 14,554 
  • Modeled Residue Count: 2,106 
  • Deposited Residue Count: 3,078 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Major capsid protein L1513human papillomavirus 45Mutation(s): 0 
Gene Names: L1
UniProt
Find proteins for P36741 (Human papillomavirus 45)
Explore P36741 
Go to UniProtKB:  P36741
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36741
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-04
    Type: Initial release
  • Version 1.1: 2026-07-01
    Changes: Data collection, Database references