9WH8 | pdb_00009wh8

Crystal Structure of Human STING bound to diABZI3

• PDB DOI: https://doi.org/10.2210/pdb9WH8/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2025-08-26 Released: 2026-03-04 
• Deposition Author(s): Zhao, Z.Z., Li, X.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.263 (Depositor), 0.267 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.212 (DCC) 
• R-Value Observed: 
  0.212 (Depositor) 

Starting Model: experimental

Literature

Species-Specific Regulation of STING by a C195 Disulfide Tetramer in Duck

Zhao, Z.Z., Li, X.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 22.39 kDa 
• Atom Count: 1,535 
• Modeled Residue Count: 172 
• Deposited Residue Count: 188 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Stimulator of interferon genes protein	A [auth B]	188	Homo sapiens	Mutation(s): 2  Gene Names: STING1, ERIS, MITA, STING, TMEM173
UniProt & NIH Common Fund Data Resources
Find proteins for Q86WV6 (Homo sapiens) Explore Q86WV6  Go to UniProtKB:  Q86WV6
PHAROS:  Q86WV6 GTEx:  ENSG00000184584

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1AZ0 (Subject of Investigation/LOI)	B	1-[(2E)-4-{5-carbamoyl-2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-7-methoxy-1H-1,3-benzimidazol-1-yl}but-2-en-1-yl]-2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-7-[3-(morpholin-4-yl)propoxy]-1H-1,3-benzimidazole-5-carboxamide C42 H51 N13 O7 JGLMVXWAHNTPRF-CMDGGOBGSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.263 (Depositor), 0.267 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.212 (DCC) 
• R-Value Observed: 0.212 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.763	α = 90
b = 62.763	β = 90
c = 219.376	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data scaling
DIALS	data reduction
PHENIX	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2026-03-04 
Deposition Author(s): Zhao, Z.Z., Li, X.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32373020

Revision History  

• Version 1.0: 2026-03-04
  Type: Initial release