9WFP | pdb_00009wfp

Structure of ABCC2(E1404Q) monomer in Arabidopsis thaliana in the DNP-GS bound state

PDB DOI: https://doi.org/10.2210/pdb9WFP/pdb
EM Map EMD-65934: EMDB EMDataResource

Classification: PROTEIN TRANSPORT
Organism(s): Arabidopsis thaliana
Expression System: Homo sapiens
Mutation(s): Yes

Deposited: 2025-08-21 Released: 2025-12-24
Deposition Author(s): Sun, L., Liu, X., Qiu, X., Yang, Z., Gao, Y.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of ABCC2(E1404Q) monomer in Arabidopsis thaliana in the DNP-GS bound state

Sun, L., Liu, X., Qiu, X., Yang, Z.

To be published.

Macromolecule Content

Total Structure Weight: 182.78 kDa
Atom Count: 10,943
Modeled Residue Count: 1,379
Deposited Residue Count: 1,623
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ABC transporter C family member 2	A	1,623	Arabidopsis thaliana	Mutation(s): 1 Gene Names: ABCC2, EST4, MRP2, At2g34660, T29F13.13 EC: 7.6.2.2
UniProt
Find proteins for Q42093 (Arabidopsis thaliana) Explore Q42093 Go to UniProtKB: Q42093
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q42093
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GDN (Subject of Investigation/LOI) Query on GDN Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	GLUTATHIONE S-(2,4 DINITROBENZENE) C₁₆ H₁₉ N₅ O₁₀ S FXEUKVKGTKDDIQ-UWVGGRQHSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.13_2998:
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-12-24

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	32322041, 32321001, 31900885

Revision History (Full details and data files)

Version 1.0: 2025-12-24
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.