9WB4 | pdb_00009wb4

HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1-composite-2

PDB DOI: https://doi.org/10.2210/pdb9WB4/pdb
NAKB: 9WB4
EM Map EMD-65833: EMDB EMDataResource

Classification: RNA BINDING PROTEIN/RNA/IMMUNE SYSTEM
Organism(s): rhinovirus B14, Homo sapiens
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2025-08-13 Released: 2026-03-25
Deposition Author(s): Wang, Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9WB4

This is version 1.0 of the entry. See complete history.

Literature

HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1-composite-2

Wang, Q.

To be published.

Macromolecule Content

Total Structure Weight: 71.33 kDa
Atom Count: 4,722
Modeled Residue Count: 486
Deposited Residue Count: 495
Unique protein chains: 3
Unique nucleic acid chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protease 3C	A	180	rhinovirus B14	Mutation(s): 0 EC: 3.4.22.28
UniProt
Find proteins for P03303 (Human rhinovirus 14) Explore P03303 Go to UniProtKB: P03303
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03303
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
YDF heavy chain	B	127	Homo sapiens	Mutation(s): 0

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
YDF light chain	C	105	Homo sapiens	Mutation(s): 0

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism	Image
Entity ID: 4
RNA (83-MER)	D [auth R]	83	rhinovirus B14
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487
RECONSTRUCTION	cryoSPARC

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-03-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2026-03-25
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.