9W69 | pdb_00009w69

Crystal structure of ASFV EP424R

• PDB DOI: https://doi.org/10.2210/pdb9W69/pdb

• Classification: TRANSFERASE
• Organism(s): African swine fever virus tick/South Africa/Pretoriuskop Pr4/1996
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2025-08-03 Released: 2025-11-26 
• Deposition Author(s): Wang, Z.X., Guo, F.L., Liu, Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.79 Å
• R-Value Free: 
  0.262 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.203 (DCC) 
• R-Value Observed: 
  0.205 (Depositor) 

Literature

Crystal structure of ASFV EP424R

Wang, Z.X., Guo, F.L., Liu, Y., Peng, G.Q.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 99.31 kDa 
• Atom Count: 6,749 
• Modeled Residue Count: 792 
• Deposited Residue Count: 848 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable methyltransferase EP424R	A, B	424	African swine fever virus tick/South Africa/Pretoriuskop Pr4/1996	Mutation(s): 0  Gene Names: Pret-067 EC: 2.1.1
UniProt
Find proteins for P0C969 (African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)) Explore P0C969  Go to UniProtKB:  P0C969

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.79 Å
• R-Value Free:  0.262 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.203 (DCC) 
• R-Value Observed: 0.205 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.254	α = 90
b = 57.939	β = 112.16
c = 102.143	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-11-26 
Deposition Author(s): Wang, Z.X., Guo, F.L., Liu, Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2025-11-26
  Type: Initial release