9W3L | pdb_00009w3l

Cryo-EM structure of GPR151-Nb6 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9W3L

This is version 1.1 of the entry. See complete history

Literature

Decoding the structure of GPR151 via NELiS.

Wang, Y.Fan, L.Song, Q.Li, Y.Jin, J.Zhao, Q.Gu, W.Shi, X.Li, D.Cong, Y.Wang, S.

(2026) Proc Natl Acad Sci U S A 123: e2534234123-e2534234123

  • DOI: https://doi.org/10.1073/pnas.2534234123
  • Primary Citation Related Structures: 
    9W3K, 9W3L

  • PubMed Abstract: 

    Structure determination of orphan G protein-coupled receptors (GPCRs) is hindered by lack of known ligands and their inherent instability during purification. Conventional thermostability screening requires ligands or purified protein, limiting its utility for orphan GPCRs. Here, we present the Nb6-Enabled Ligand-Free Stabilization Platform (NELiS)-a ligand- and purification-independent method for identifying stabilizing mutations. Applied to GPR151, an orphan GPCR enriched in habenula and implicated in neuropsychiatric disorders, NELiS identified four mutations that significantly improved thermostability and expression, allowing receptor purification. Using the stabilized and purified receptor, we further found a high-affinity, GPR151-specific nanobody that facilitated structural determination. Structural analysis revealed unconventional activation-resistant features across canonical motifs and an autoinhibitory N-terminal region occupying the orthosteric pocket. Functional studies confirmed a unique activation mechanism and the critical role of the N terminus in receptor maturation and trafficking. These results establish NELiS as a generalizable tool for structural and functional investigation of orphan GPCRs.


  • Organizational Affiliation
    • Key Laboratory of Multi-Cell Systems, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China.

Macromolecule Content 

  • Total Structure Weight: 60.77 kDa 
  • Atom Count: 3,021 
  • Modeled Residue Count: 401 
  • Deposited Residue Count: 546 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
G-protein coupled receptor 151419Homo sapiensMutation(s): 0 
Gene Names: GPR151GALR4GALRLPGR7
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDV0 (Homo sapiens)
Explore Q8TDV0 
Go to UniProtKB:  Q8TDV0
GTEx:  ENSG00000173250 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TDV0
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
NB6127Spodoptera frugiperdaMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-06
    Type: Initial release
  • Version 1.1: 2026-05-13
    Changes: Data collection, Database references