9W0U | pdb_00009w0u

CryoEM structure of the T2R46 in complex with tangeretin and heterotrimeric G protein complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 9W0U

This is version 1.1 of the entry. See complete history

Literature

Ligand binding modes of the bitter taste receptor T2R14 and T2R46.

Tan, Q.Yu, Y.Han, X.Liu, K.Han, S.Wang, M.Wei, Y.Zhu, Y.Chen, Q.Ma, L.Yi, C.Chu, X.Wu, B.Zhao, Q.

(2026) Nat Struct Mol Biol 33: 691-700

  • DOI: https://doi.org/10.1038/s41594-026-01786-8
  • Primary Citation Related Structures: 
    9W0P, 9W0Q, 9W0R, 9W0S, 9W0T, 9W0U, 9W0W

  • PubMed Abstract: 

    Bitter taste receptors (T2Rs) are considered attractive drug targets. However, the ligand recognition and selectivity of these receptors remain elusive, hampering their drug development. Here we present seven structures of human T2R14 and T2R46 in apo or ligand-bound state. Combined with molecular docking and mutagenesis data, the structures reveal an extracellular ligand-binding site in T2R14 for most of its ligands, which is different from the intracellular binding site reported recently. In contrast, T2R46 exhibits a conserved binding pocket that accommodates various ligands with distinct interaction patterns. Furthermore, the second extracellular loop in T2R14 and T2R46 acts as a tethered agonist to potentially facilitate agonist response of these two receptors to the weak tastant agonists. These findings could accelerate drug discovery targeting T2Rs.


  • Organizational Affiliation
    • State Key laboratory of Drug, Research, State Key Laboratory of Chemical Biology, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China. qxtan@simm.ac.cn.

Macromolecule Content 

  • Total Structure Weight: 128.99 kDa 
  • Atom Count: 6,672 
  • Modeled Residue Count: 876 
  • Deposited Residue Count: 1,139 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1354Homo sapiensMutation(s): 5 
Gene Names: GNAI1
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens)
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Go to UniProtKB:  P63096
PHAROS:  P63096
GTEx:  ENSG00000127955 
Entity Groups
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UniProt GroupP63096
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1351Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
Explore P62873 
Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-271Homo sapiensMutation(s): 0 
Gene Names: GNG2
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
Explore P59768 
Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Taste receptor type 2 member 46D [auth R]363Homo sapiensMutation(s): 0 
Gene Names: TAS2R46
UniProt & NIH Common Fund Data Resources
Find proteins for P59540 (Homo sapiens)
Explore P59540 
Go to UniProtKB:  P59540
PHAROS:  P59540
GTEx:  ENSG00000226761 
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UniProt GroupP59540
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1EUI

Query on A1EUI



Download:Ideal Coordinates CCD File
E [auth R]5,6,7,8-tetramethoxy-2-(4-methoxyphenyl)chromen-4-one
C20 H20 O7
ULSUXBXHSYSGDT-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China2022YFA1302900
National Science Foundation (NSF, China)China82121005
National Science Foundation (NSF, China)ChinaXDB37030100
Chinese Academy of SciencesChinaJCYJ-SHFY-2021-008

Revision History  (Full details and data files)

  • Version 1.0: 2026-04-22
    Type: Initial release
  • Version 1.1: 2026-05-06
    Changes: Data collection, Database references