9VYF | pdb_00009vyf

Cyanopodophage Pan3 portal complex

PDB DOI: https://doi.org/10.2210/pdb9VYF/pdb
EM Map EMD-65451: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Pseudanabaena phage Pan3
Mutation(s): No

Deposited: 2025-07-21 Released: 2025-11-26
Deposition Author(s): Hou, P., Zhou, C.Z., Jiang, Y.L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of cyanopodophage Pan3 reveals a new host recognition mode

Hou, P., Zhou, C.Z., Jiang, Y.L.

To be published.

Macromolecule Content

Total Structure Weight: 831.85 kDa
Atom Count: 51,668
Modeled Residue Count: 6,525
Deposited Residue Count: 7,440
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Portal protein	A [auth H] B [auth I] C [auth J] D [auth K] E [auth L] A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S]	620	Pseudanabaena phage Pan3	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-11-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32430001
National Natural Science Foundation of China (NSFC)	China	92451302

Revision History (Full details and data files)

Version 1.0: 2025-11-26
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.