9VLZ | pdb_00009vlz

CryoEM structure of GasderminE-N pore

• PDB DOI: https://doi.org/10.2210/pdb9VLZ/pdb
• EM Map EMD-65173: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2025-06-26 Released: 2026-07-01 
• Deposition Author(s): Zhao, X., Liu, Z., Li, S., Zhang, K., Li, S.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.46 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation

Currently 9VLZ does not have a validation slider image.

Literature

Elucidating the Architectural Dynamics of MuB Filaments in Bacteriophage Mu DNA Transposition

Zhao, X., Li, S., Gao, Y., Gong, Q., Zhang, K., Li, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C28  (Explore in 3D)
Global Stoichiometry: Homo 28-mer - A28 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 829.75 kDa 
• Atom Count: 54,152 
• Modeled Residue Count: 6,916 
• Deposited Residue Count: 7,392 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gasdermin-E, N-terminal	A [auth J], AA [auth W], B [auth X], BA [auth K], C [auth Y], D [auth A], E [auth Z], F [auth B], G [auth C], H [auth L], I [auth a], J [auth E], K [auth F], L [auth O], M [auth G], N [auth Q], O [auth S], P [auth D], Q [auth b], R [auth P], S [auth M], T [auth R], U [auth T], V [auth H], W [auth N], X [auth U], Y [auth V], Z [auth I]	264	Homo sapiens	Mutation(s): 0  Gene Names: GSDME, DFNA5, ICERE1
UniProt & NIH Common Fund Data Resources
Find proteins for O60443 (Homo sapiens) Explore O60443  Go to UniProtKB:  O60443
PHAROS:  O60443 GTEx:  ENSG00000105928

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.46 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.7.0

Structure Validation

Currently 9VLZ does not have a validation slider image.

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-07-01 
Deposition Author(s): Zhao, X., Liu, Z., Li, S., Zhang, K., Li, S.

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Funding Organization	Location	Grant Number
Other government		--

Revision History  

• Version 1.0: 2026-07-01
  Type: Initial release