9VJJ | pdb_00009vjj

Crystal Structure of human Latent TGF-beta1 in complex with SOF10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 
    0.310 (Depositor), 0.307 (DCC) 
  • R-Value Work: 
    0.281 (Depositor), 0.279 (DCC) 
  • R-Value Observed: 
    0.283 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Selective blockade of latent TGF-beta 1 activation suppresses tissue fibrosis with good safety.

Kanamori, M.Sato, I.Koo, C.X.Sun, Y.Kawauchi, H.Nakagawa, K.Murai, A.Asanuma, K.Gan, S.W.Pang, C.L.Shimizu, Y.Shida-Kawazoe, M.Kanamaru, C.Kayukawa, Y.Hada, N.Ohmine, K.Kitazawa, T.Nezu, J.Igawa, T.Shimada, H.

(2026) Commun Med (Lond) 6

  • DOI: https://doi.org/10.1038/s43856-026-01408-w
  • Primary Citation Related Structures: 
    9VJJ

  • PubMed Abstract: 

    Fibrosis is a hallmark of organ failure observed after chronic epithelial injury and inflammation. The transforming growth factor beta (TGF-β) is the master regulator of fibrogenesis, so blockade of the TGF-β pathway is a potential treatment strategy for fibrosis; however, the therapeutic potential of pan-TGF-β blockade is limited by side effects. We generated SOF10, a humanized antibody that targets latent TGF-β1 and selectively blocks protease- and integrin αvβ8-mediated latent TGF-β1 activation. We conducted gene expression and histological analyses in nonalcoholic steatohepatitis (NASH)/liver fibrosis and renal interstitial fibrosis models. We also evaluated the combination effect of SOF10 with an immune checkpoint inhibitor in a syngeneic mouse model and performed safety studies in mice and monkeys. Here we show that SOF10 reduces fibrosis in NASH/liver fibrosis and renal interstitial fibrosis models and improves renal function in a chronic kidney disease model. Furthermore, the combination of SOF10 with an anti-PD-L1 antibody decreases tumor growth in a syngeneic mouse model. SOF10 demonstrates safety in both mice and monkeys. Selective blockade of latent TGF-β1 activation represents a promising approach for treating a broad range of fibrotic diseases and cancers. By specifically targeting TGF-β1, SOF10 may offer a safer and more effective therapeutic option compared to non-selective TGF-β inhibitors. This strategy has the potential to transform the treatment paradigm for fibrosis-related conditions.


  • Organizational Affiliation
    • Research Division, Chugai Pharmaceutical Co. Ltd., Yokohama, Kanagawa, Japan.

Macromolecule Content 

  • Total Structure Weight: 181.87 kDa 
  • Atom Count: 8,418 
  • Modeled Residue Count: 1,077 
  • Deposited Residue Count: 1,622 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transforming growth factor beta-1 proprotein
A, B
369Homo sapiensMutation(s): 1 
Gene Names: TGFB1TGFB
UniProt & NIH Common Fund Data Resources
Find proteins for P01137 (Homo sapiens)
Explore P01137 
Go to UniProtKB:  P01137
PHAROS:  P01137
GTEx:  ENSG00000105329 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01137
Glycosylation
Glycosylation Sites: 2Go to GlyGen: P01137-1
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
SOF10 Fab heavy chainC [auth H],
D [auth I]
227Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
SOF10 Fab light chainE [auth L],
F [auth M]
215Homo sapiensMutation(s): 0 

Oligosaccharides

Help  
Entity ID: 4
MoleculeChains Length2D Diagram GlycosylationD Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseG [auth X],
H [auth C],
I [auth D],
J [auth E]
2N-Glycosylation
Glycosylation Resources
GlyTouCan: G42666HT
GlyCosmos: G42666HT
GlyGen: G42666HT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free:  0.310 (Depositor), 0.307 (DCC) 
  • R-Value Work:  0.281 (Depositor), 0.279 (DCC) 
  • R-Value Observed: 0.283 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 225.878α = 90
b = 91.707β = 108.58
c = 126.12γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
autoPROCdata processing
XDSdata reduction
Aimlessdata scaling
STARANISOdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-04
    Type: Initial release
  • Version 1.1: 2026-03-11
    Changes: Database references
  • Version 1.2: 2026-03-18
    Changes: Database references