9VBT | pdb_00009vbt

Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:4:4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Evolutionary repurposing of a metabolic thiolase complex enables antibiotic biosynthesis.

Liao, G.Sun, R.Shen, Z.Luo, Z.Pang, C.Shen, Z.Wei, A.Mi, C.Wu, G.Li, F.Li, Y.X.Hoi, K.K.Pan, X.Tang, X.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-68910-6
  • Primary Citation of Related Structures:  
    9VBO, 9VBT

  • PubMed Abstract: 

    The functional diversification of biosynthetic enzymes underlies the chemical richness of natural products, yet how primary metabolic enzymes evolve to acquire specialized functions in secondary metabolism remains elusive. Here, we report a tripartite enzyme complex from oral Streptococcus species-comprising 3-hydroxy-3-methylglutaryl (HMG)-CoA synthase (HMGS), acetyl-CoA acetyltransferase (ACAT), and a DUF35 protein-that catalyzes an unusual Friedel-Crafts C-acetylation on a pyrrolidine-2,4-dione scaffold, completing the biosynthesis of the antibiotic reutericyclin A. Cryo-electron microscopy of the S. macacae-derived thiolase complex (SmaATase) reveals a conserved architecture resembling the archaeal HMGS/ACAT/DUF35 complex involved in the mevalonate pathway, yet with key catalytic residues rewired to reprogram substrate specificity. Biochemical characterization, molecular modeling, and evolutionary analysis confirmed that the ancestral activity of HMG-CoA synthesis has been lost, while the complex has been repurposed to mediate Friedel-Crafts C-acylation of small molecule acceptors. These findings reveal a rare example of thiolase complex neofunctionalization, shedding light on an underexplored trajectory in enzyme evolution and offering a template for engineering C-C bond-forming catalysts in synthetic biology.


  • Organizational Affiliation
    • Institute of Chemical Biology, Shenzhen Bay Laboratory, Shenzhen, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal domain protein
A, B, C, D
359Streptococcus macacae NCTC 11558Mutation(s): 0 
Gene Names: STRMA_1492
UniProt
Find proteins for G5JW78 (Streptococcus macacae NCTC 11558)
Explore G5JW78 
Go to UniProtKB:  G5JW78
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG5JW78
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
2,4-diacetylphloroglucinol biosynthesis protein PhlB family proteinE [auth H],
H [auth K],
I [auth L],
L [auth G]
148Streptococcus macacae NCTC 11558Mutation(s): 0 
Gene Names: STRMA_1490
UniProt
Find proteins for G5JW76 (Streptococcus macacae NCTC 11558)
Explore G5JW76 
Go to UniProtKB:  G5JW76
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG5JW76
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain proteinF [auth I],
G [auth J],
J [auth E],
K [auth F]
411Streptococcus macacae NCTC 11558Mutation(s): 0 
Gene Names: STRMA_1491
UniProt
Find proteins for G5JW77 (Streptococcus macacae NCTC 11558)
Explore G5JW77 
Go to UniProtKB:  G5JW77
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG5JW77
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.18.2_3874
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32322039
National Natural Science Foundation of China (NSFC)China32401633
National Natural Science Foundation of China (NSFC)China82173719

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-11
    Type: Initial release