9V5F | pdb_00009v5f

Crystal structure of the aromatic prenyltransferase AtaPT(G326W) mutant from Aspergillus terreus

PDB DOI: https://doi.org/10.2210/pdb9V5F/pdb

Classification: TRANSFERASE
Organism(s): Aspergillus terreus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2025-05-25 Released: 2026-05-27
Deposition Author(s): Huang, H.S., Zhang, Z.M.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.246 (Depositor), 0.251 (DCC)
R-Value Work:
0.209 (Depositor), 0.219 (DCC)
R-Value Observed:
0.212 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Simultaneous Multi-Parameter Directed Evolution of the Prenyltransferase AtaPT: Developing a Facile Access to Diverse Rare C-prenylated Flavonoids

Huang, H.S., Zhang, Z.M.

To be published.

Macromolecule Content

Total Structure Weight: 93.23 kDa
Atom Count: 6,286
Modeled Residue Count: 795
Deposited Residue Count: 828
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aromatic prenyltransferase	A, B	414	Aspergillus terreus	Mutation(s): 1 Gene Names: PT
UniProt
Find proteins for A0A1B0UHJ4 (Aspergillus terreus) Explore A0A1B0UHJ4 Go to UniProtKB: A0A1B0UHJ4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1B0UHJ4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.246 (Depositor), 0.251 (DCC)
R-Value Work: 0.209 (Depositor), 0.219 (DCC)
R-Value Observed: 0.212 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.772	α = 90
b = 137.388	β = 90
c = 69.762	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing
Coot	model building

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-27

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2026-05-27
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.