9V10 | pdb_00009v10

Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9V10

This is version 1.0 of the entry. See complete history

Literature

Doublet microtubule-associated tektins and enzymes differentially regulate sperm flagellar integrity and motility.

Liu, Q.Zhou, L.Liang, X.Chen, P.Li, B.Yang, S.Liu, Y.Zhao, H.Hu, J.Feng, S.Xie, S.Wu, J.Gui, M.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-69714-4
  • Primary Citation Related Structures: 
    9V10

  • PubMed Abstract: 

    Doublet microtubule (DMT)-associated proteins assemble and drive sperm flagella, which are essential for successful fertilization. However, the exact roles of different DMT-associated proteins in sperm function and the underlying molecular mechanisms remain elusive. Here, we generate four gene-knockout mice based on high-resolution structures targeting distinct DMT components: two intermediate filament-like tektins (TEKT1, TEKT5) and two enzymes (TSSK6, DUSP21). The depletion of TEKT1, shared by sperm flagella and motile cilia, causes male infertility characterized by impaired sperm motility and loss of the tektin bundle, whereas sperm-specific Tekt5 knockout (KO) mice remain fertile with largely normal flagellar function, indicating functional divergence within the tektin family. Tssk6 KO spermatozoa exhibit severely disturbed morphology and motility, resulting in homozygote infertility and heterozygote subfertility. Phosphoproteomics reveals dysregulated phosphorylation of axonemal proteins, highlighting the critical role of kinase-mediated signaling in regulating sperm motility. Conversely, Dusp21 KO mice display no fertility or sperm motility defects, suggesting compensatory phosphatase activity. Phenotypic comparisons between Tekt1 and Tssk6 KO mice suggest their involvement in distinct subtypes of asthenozoospermia. Overall, this study elucidates how filamentous and enzymatic DMT proteins govern sperm function through divergent mechanisms, which have implications for molecular diagnosis of male infertility.


  • Organizational Affiliation
    • Department of Obstetrics and Gynecology, Sir Run Run Shaw Hospital and Liangzhu Laboratory, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.

Macromolecule Content 

  • Total Structure Weight: 27,941.67 kDa 
  • Atom Count: 1,603,403 
  • Modeled Residue Count: 201,106 
  • Deposited Residue Count: 245,790 
  • Unique protein chains: 60

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 95A [auth 0],
H [auth 7]
228Mus musculusMutation(s): 0 
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
EF-hand domain-containing family member BB [auth 1],
C [auth 2]
853Mus musculusMutation(s): 0 
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Find proteins for Q8CDU5 (Mus musculus)
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IMPC:  MGI:3045296
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 53D [auth 3],
E [auth 4]
514Mus musculusMutation(s): 0 
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Find proteins for Q9D439 (Mus musculus)
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IMPC:  MGI:1921703
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Nucleoside diphosphate kinase homolog 7F [auth 5],
FV [auth j1],
G [auth 6]
395Mus musculusMutation(s): 0 
EC: 3.1 (PDB Primary Data), 2.7 (PDB Primary Data), 2.7.11.1 (UniProt), 3.1.11 (UniProt)
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IMPC:  MGI:2449121
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 107I [auth 8]196Mus musculusMutation(s): 0 
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IMPC:  MGI:1916614
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 141J [auth A],
PJ [auth N1]
101Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9D9D9 (Mus musculus)
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Tektin-1418Mus musculusMutation(s): 0 
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IMPC:  MGI:1333819
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Tubulin alpha-3 chain
AA [auth AK],
AE [auth FM],
AF [auth HE],
AG [auth IM],
AI [auth LA],
AO [auth RK],
BB [auth BM],
BC [auth CO],
BD [auth EC],
BH [auth JQ],
BJ [auth ME],
BK [auth NK],
BL [auth OG],
BN [auth QG],
BP [auth SK],
CA [auth AM],
CF [auth HG],
CG [auth IO],
CI [auth LC],
CO [auth RM],
DB [auth BO],
DD [auth EE],
DJ [auth MG],
DK [auth NM],
DL [auth OI],
DN [auth QI],
DP [auth SM],
EA [auth AO],
EF [auth HI],
EI [auth LE],
EM [auth PC],
EO [auth RO],
FD [auth EG],
FJ [auth MI],
FK [auth NO],
FL [auth OK],
FN [auth QK],
GF [auth HK],
GH [auth KA],
GI [auth LG],
GM [auth PE],
HD [auth EI],
HJ [auth MK],
HL [auth OM],
HN [auth QM],
HS [auth WC],
IE [auth GC],
IF [auth HM],
IH [auth KC],
II [auth LI],
IM [auth PG],
JD [auth EK],
JJ [auth MM],
JL [auth OO],
JN [auth QO],
JS [auth WE],
KC [auth DC],
KE [auth GE],
KF [auth HO],
KH [auth KE],
KI [auth LK],
KM [auth PI],
KR [auth VA],
LD [auth EM],
LJ [auth MO],
LQ [auth UA],
LS [auth WG],
MC [auth DE],
ME [auth GG],
MH [auth KG],
MI [auth LM],
MM [auth PK],
MP [auth TA],
MR [auth VC],
NG [auth JC],
NQ [auth UC],
NS [auth WI],
OC [auth DG],
OE [auth GI],
OH [auth KI],
OI [auth LO],
OM [auth PM],
OP [auth TC],
OR [auth VE],
PB [auth CC],
PG [auth JE],
PQ [auth UE],
PS [auth WK],
Q [auth AA],
QC [auth DI],
QD [auth FC],
QE [auth GK],
QF [auth IC],
QH [auth KK],
QM [auth PO],
QP [auth TE],
QR [auth VG],
RA [auth BC],
RB [auth CE],
RG [auth JG],
RJ [auth NA],
RO [auth SA],
RQ [auth UG],
RS [auth WM],
S [auth AC],
SC [auth DK],
SD [auth FE],
SE [auth GM],
SF [auth IE],
SH [auth KM],
SN [auth RC],
SP [auth TG],
SR [auth VI],
TA [auth BE],
TB [auth CG],
TG [auth JI],
TJ [auth NC],
TO [auth SC],
TQ [auth UI],
TS [auth WO],
U [auth AE],
UC [auth DM],
UD [auth FG],
UE [auth GO],
UF [auth IG],
UH [auth KO],
UN [auth RE],
UP [auth TI],
UR [auth VK],
VA [auth BG],
VB [auth CI],
VG [auth JK],
VJ [auth NE],
VO [auth SE],
VQ [auth UK],
W [auth AG],
WC [auth DO],
WD [auth FI],
WF [auth II],
WN [auth RG],
WP [auth TK],
WR [auth VM],
XA [auth BI],
XB [auth CK],
XG [auth JM],
XI [auth MA],
XJ [auth NG],
XK [auth OC],
XM [auth QC],
XO [auth SG],
XQ [auth UM],
Y [auth AI],
YD [auth FK],
YE [auth HC],
YF [auth IK],
YN [auth RI],
YP [auth TM],
YR [auth VO],
ZA [auth BK],
ZB [auth CM],
ZC [auth EA],
ZG [auth JO],
ZI [auth MC],
ZJ [auth NI],
ZK [auth OE],
ZM [auth QE],
ZO [auth SI]
450Mus musculusMutation(s): 0 
EC: 3.6.5
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Tubulin beta-4B chain
AB [auth BL],
AC [auth CN],
AD [auth EB],
AH [auth JP],
AJ [auth MD],
AK [auth NJ],
AL [auth OF],
AN [auth QF],
AP [auth SJ],
BA [auth AL],
BE [auth FN],
BF [auth HF],
BG [auth IN],
BI [auth LB],
BO [auth RL],
CB [auth BN],
CC [auth CP],
CD [auth ED],
CJ [auth MF],
CK [auth NL],
CL [auth OH],
CN [auth QH],
CP [auth SL],
DA [auth AN],
DF [auth HH],
DG [auth IP],
DI [auth LD],
DM [auth PB],
DO [auth RN],
EB [auth BP],
ED [auth EF],
EJ [auth MH],
EK [auth NN],
EL [auth OJ],
EN [auth QJ],
EP [auth SN],
FA [auth AP],
FF [auth HJ],
FI [auth LF],
FM [auth PD],
FO [auth RP],
GD [auth EH],
GJ [auth MJ],
GK [auth NP],
GL [auth OL],
GN [auth QL],
GS [auth WB],
HE [auth GB],
HF [auth HL],
HH [auth KB],
HI [auth LH],
HM [auth PF],
ID [auth EJ],
IJ [auth ML],
IL [auth ON],
IN [auth QN],
IS [auth WD],
JE [auth GD],
JF [auth HN],
JH [auth KD],
JI [auth LJ],
JM [auth PH],
KD [auth EL],
KJ [auth MN],
KL [auth OP],
KN [auth QP],
KS [auth WF],
LC [auth DD],
LE [auth GF],
LH [auth KF],
LI [auth LL],
LM [auth PJ],
LR [auth VB],
MD [auth EN],
MJ [auth MP],
MQ [auth UB],
MS [auth WH],
NC [auth DF],
NE [auth GH],
NH [auth KH],
NI [auth LN],
NM [auth PL],
NP [auth TB],
NR [auth VD],
OG [auth JD],
OQ [auth UD],
OS [auth WJ],
PC [auth DH],
PD [auth FB],
PE [auth GJ],
PF [auth IB],
PH [auth KJ],
PI [auth LP],
PM [auth PN],
PP [auth TD],
PR [auth VF],
QA [auth BB],
QB [auth CD],
QG [auth JF],
QQ [auth UF],
QS [auth WL],
R [auth AB],
RC [auth DJ],
RD [auth FD],
RE [auth GL],
RF [auth ID],
RH [auth KL],
RM [auth PP],
RP [auth TF],
RR [auth VH],
SA [auth BD],
SB [auth CF],
SG [auth JH],
SJ [auth NB],
SO [auth SB],
SQ [auth UH],
SS [auth WN],
T [auth AD],
TC [auth DL],
TD [auth FF],
TE [auth GN],
TF [auth IF],
TH [auth KN],
TN [auth RD],
TP [auth TH],
TR [auth VJ],
UA [auth BF],
UB [auth CH],
UG [auth JJ],
UJ [auth ND],
UO [auth SD],
UQ [auth UJ],
V [auth AF],
VC [auth DN],
VD [auth FH],
VF [auth IH],
VH [auth KP],
VN [auth RF],
VP [auth TJ],
VR [auth VL],
WA [auth BH],
WB [auth CJ],
WG [auth JL],
WJ [auth NF],
WK [auth OB],
WO [auth SF],
WQ [auth UL],
X [auth AH],
XC [auth DP],
XD [auth FJ],
XE [auth HB],
XF [auth IJ],
XN [auth RH],
XP [auth TL],
XR [auth VN],
YA [auth BJ],
YB [auth CL],
YG [auth JN],
YI [auth MB],
YJ [auth NH],
YK [auth OD],
YM [auth QD],
YO [auth SH],
YQ [auth UN],
Z [auth AJ],
ZD [auth FL],
ZE [auth HD],
ZF [auth IL],
ZN [auth RJ],
ZP [auth TN]
445Mus musculusMutation(s): 0 
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IMPC:  MGI:1915472
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Reference Sequence
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm axonemal maintenance protein CFAP97D1GA [auth Aa],
HA [auth Ab],
IA [auth Ac]
164Mus musculusMutation(s): 0 
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IMPC:  MGI:1922687
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Meiosis-specific nuclear structural protein 1IB [auth C],
JA [auth B]
491Mus musculusMutation(s): 0 
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Find proteins for Q61884 (Mus musculus)
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
Tektin-2430Mus musculusMutation(s): 0 
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Find proteins for Q922G7 (Mus musculus)
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
EF-hand calcium-binding domain-containing protein 3FB [auth Ba],
GB [auth Bb],
HB [auth Bc]
432Mus musculusMutation(s): 0 
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Find proteins for Q80X60 (Mus musculus)
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
Tektin-3490Mus musculusMutation(s): 0 
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Find proteins for Q6X6Z7 (Mus musculus)
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm-associated antigen 8DC [auth D],
FH [auth K3]
470Mus musculusMutation(s): 0 
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Find proteins for Q3V0Q6 (Mus musculus)
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
Tektin-4447Mus musculusMutation(s): 0 
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Find proteins for Q149S1 (Mus musculus)
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Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 161OD [auth F],
QJ [auth N2],
YC [auth E]
303Mus musculusMutation(s): 0 
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IMPC:  MGI:1922806
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
Ciliary microtubule inner protein 1ND [auth Ea]136Mus musculusMutation(s): 0 
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IMPC:  MGI:1919471
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
Ciliary microtubule inner protein 3CE [auth Fa],
DE [auth Fb],
EE [auth Fc],
FE [auth Fd]
210Mus musculusMutation(s): 0 
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Find proteins for Q8K168 (Mus musculus)
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Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
Piercer of microtubule wall 2 proteinGE [auth G]122Mus musculusMutation(s): 0 
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IMPC:  MGI:3648770
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Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
Ciliary microtubule inner protein 4VE [auth Ga]266Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9D9J2 (Mus musculus)
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
Ciliary microtubule inner protein 2A319Mus musculusMutation(s): 0 
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Find proteins for Q9D4K5 (Mus musculus)
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
Luteinizing hormone betaLF [auth Ha],
MF [auth Hb]
310Mus musculusMutation(s): 0 
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Find proteins for A0A571BEL8 (Mus musculus)
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 68OF [auth I1]166Mus musculusMutation(s): 0 
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein SPMIP1EG [auth Ia],
FG [auth Ib],
GG [auth Ic]
177Mus musculusMutation(s): 0 
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 77IG [auth J1],
JG [auth J2],
KG [auth J3],
LG [auth J4],
MG [auth J5]
283Mus musculusMutation(s): 0 
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 144DH [auth K1],
EH [auth K2]
135Mus musculusMutation(s): 0 
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein SPMIP3WH [auth Ka],
XH [auth Kb]
145Mus musculusMutation(s): 0 
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IMPC:  MGI:1916678
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 90ZH [auth L1]182Mus musculusMutation(s): 0 
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm-associated microtubule inner protein 4QI [auth La],
RI [auth Lb]
588Mus musculusMutation(s): 0 
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
Ciliary microtubule inner protein 2CTI [auth M1],
UI [auth M2],
VI [auth M3],
WI [auth M4]
200Mus musculusMutation(s): 0 
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IMPC:  MGI:1922684
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Entity ID: 32
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein SPMIP7NJ [auth Ma]441Mus musculusMutation(s): 0 
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm microtubule inner protein 8HK [auth Na],
IK [auth Nb],
JK [auth Nc],
KK [auth Nd],
LK [auth Ne]
216Mus musculusMutation(s): 0 
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Entity ID: 34
MoleculeChains  Sequence LengthOrganismDetailsImage
RIB43A-like with coiled-coils protein 1MK [auth O],
SM [auth Q],
TL [auth P]
379Mus musculusMutation(s): 0 
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Entity ID: 35
MoleculeChains  Sequence LengthOrganismDetailsImage
Dual specificity phosphatase 21NK [auth O1],
OK [auth O2],
PK [auth O3],
QK [auth O4]
189Mus musculusMutation(s): 0 
EC: 3.1.3.16 (PDB Primary Data), 3.1.3.48 (PDB Primary Data)
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Entity ID: 36
MoleculeChains  Sequence LengthOrganismDetailsImage
EF-hand domain-containing protein 1AQ [auth U],
FP [auth T],
RK [auth O5],
SK [auth O6],
ZQ [auth V]
648Mus musculusMutation(s): 0 
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Entity ID: 37
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm microtubule inner protein 6260Mus musculusMutation(s): 0 
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Entity ID: 38
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm microtubule inner protein 11UL [auth P1],
VL [auth P2]
131Mus musculusMutation(s): 0 
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Entity ID: 39
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein SPMIP9AM [auth P7],
WL [auth P3],
XL [auth P4],
YL [auth P5],
ZL [auth P6]
180Mus musculusMutation(s): 0 
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IMPC:  MGI:1921471
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Entity ID: 40
MoleculeChains  Sequence LengthOrganismDetailsImage
Tektin bundle-interacting protein 1TM [auth Q1],
UM [auth Q2],
VM [auth Q3],
WM [auth Q4]
206Mus musculusMutation(s): 0 
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Entity ID: 41
MoleculeChains  Sequence LengthOrganismDetailsImage
RIB43A-like with coiled-coils protein 2GO [auth S],
LN [auth R]
377Mus musculusMutation(s): 0 
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Entity ID: 42
MoleculeChains  Sequence LengthOrganismDetailsImage
Tektin-5557Mus musculusMutation(s): 0 
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Entity ID: 43
MoleculeChains  Sequence LengthOrganismDetailsImage
EF-hand domain-containing family member C2HT [auth Y],
US [auth X],
YT [auth Z],
ZR [auth W]
750Mus musculusMutation(s): 0 
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Entity ID: 44
MoleculeChains  Sequence LengthOrganismDetailsImage
Stabilizer of axonemal microtubules 4VS [auth X4],
WS [auth X5]
427Mus musculusMutation(s): 0 
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IMPC:  MGI:1915002
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Entity ID: 45
MoleculeChains  Sequence LengthOrganismDetailsImage
Testis-specific serine/threonine-protein kinase 6XS [auth X6],
YS [auth X7],
ZS [auth X8]
273Mus musculusMutation(s): 0 
EC: 2.7.11.1
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Entity ID: 46
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 20193Mus musculusMutation(s): 0 
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Entity ID: 47
MoleculeChains  Sequence LengthOrganismDetailsImage
Ciliary microtubule associated protein 1A254Mus musculusMutation(s): 0 
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Entity ID: 48
MoleculeChains  Sequence LengthOrganismDetailsImage
Parkin coregulated gene protein homolog241Mus musculusMutation(s): 0 
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IMPC:  MGI:1916560
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Entity ID: 49
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 45DU [auth a],
IU [auth a6],
JU [auth b],
PU [auth c],
QU [auth d]
551Mus musculusMutation(s): 0 
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Entity ID: 50
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm-associated microtubule inner protein 5EU [auth a1],
FU [auth a2],
GU [auth a3],
HU [auth a4]
229Mus musculusMutation(s): 0 
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Entity ID: 51
MoleculeChains  Sequence LengthOrganismDetailsImage
Tektin-like protein 1KU [auth b1],
LU [auth b2],
MU [auth b3],
NU [auth b4],
OU [auth b5]
499Mus musculusMutation(s): 0 
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Entity ID: 52
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 52RU [auth e],
SU [auth f],
TU [auth g]
620Mus musculusMutation(s): 0 
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Entity ID: 53
MoleculeChains  Sequence LengthOrganismDetailsImage
EnkurinEV [auth j],
GV [auth k],
UU [auth h],
ZU [auth i]
255Mus musculusMutation(s): 0 
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IMPC:  MGI:1918483
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Entity ID: 54
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm-associated microtubule inner protein 10VU [auth h1],
WU [auth h2],
XU [auth h3],
YU [auth h4]
141Mus musculusMutation(s): 0 
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Entity ID: 55
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein FlattopAV [auth i1],
HV [auth l],
IV [auth m],
JV [auth n]
189Mus musculusMutation(s): 0 
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Entity ID: 56
MoleculeChains  Sequence LengthOrganismDetailsImage
EF-hand calcium-binding domain-containing protein 6BV [auth i2],
CV [auth i3],
DV [auth i4]
1,516Mus musculusMutation(s): 0 
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Entity ID: 57
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella- associated protein 210KV [auth o],
LV [auth p]
547Mus musculusMutation(s): 0 
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Entity ID: 58
MoleculeChains  Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 276MV [auth q],
NV [auth r],
OV [auth s]
168Mus musculusMutation(s): 0 
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Entity ID: 59
MoleculeChains  Sequence LengthOrganismDetailsImage
Piercer of microtubule wall 1 proteinPV [auth y]167Mus musculusMutation(s): 0 
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IMPC:  MGI:1916577
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Entity ID: 60
MoleculeChains  Sequence LengthOrganismDetailsImage
Sperm microtubule inner protein 2QV [auth ke]189Mus musculusMutation(s): 0 
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IMPC:  MGI:4936993
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Reference Sequence

Small Molecules

Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GTP

Query on GTP



Download:Ideal Coordinates CCD File
AAA [auth FE]
ABA [auth GI]
AGA [auth ME]
AIA [auth OI]
AJA [auth PK]
AAA [auth FE],
ABA [auth GI],
AGA [auth ME],
AIA [auth OI],
AJA [auth PK],
AKA [auth QO],
AW [auth AG],
AY [auth CM],
BCA [auth HM],
BDA [auth JC],
BEA [auth KC],
BHA [auth NG],
BLA [auth SC],
BNA [auth UI],
BOA [auth VM],
BZ [auth EA],
CBA [auth GK],
CFA [auth LE],
CJA [auth PM],
CMA [auth TG],
CX [auth BK],
DAA [auth FG],
DCA [auth HN],
DGA [auth MG],
DIA [auth OK],
DKA [auth RC],
DNA [auth UK],
DW [auth AH],
DY [auth CO],
EDA [auth JE],
EEA [auth KE],
EHA [auth NH],
ELA [auth SE],
EZ [auth EC],
FBA [auth GM],
FFA [auth LG],
FJA [auth PO],
FMA [auth TI],
FOA [auth VO],
FX [auth BM],
GAA [auth FI],
GGA [auth MI],
GKA [auth RE],
GNA [auth UM],
GW [auth AK],
GY [auth DC],
HCA [auth IC],
HDA [auth JG],
HEA [auth KG],
HHA [auth NK],
HIA [auth OM],
HLA [auth SG],
HOA [auth WC],
HZ [auth EE],
IBA [auth GO],
IFA [auth LI],
IJA [auth QC],
IMA [auth TK],
IX [auth BO],
JAA [auth FK],
JCA [auth IE],
JGA [auth MK],
JKA [auth RG],
JNA [auth VA],
JW [auth AL],
JY [auth DE],
KDA [auth JI],
KEA [auth KI],
KHA [auth NM],
KIA [auth OO],
KLA [auth SI],
KOA [auth WE],
KZ [auth EG],
LBA [auth HC],
LFA [auth LK],
LJA [auth QE],
LMA [auth TM],
LX [auth CC],
MAA [auth FM],
MCA [auth IG],
MGA [auth MM],
MKA [auth RI],
MNA [auth VC],
MW [auth AO],
NDA [auth JK],
NEA [auth KK],
NHA [auth NO],
NIA [auth PC],
NLA [auth SK],
NOA [auth WG],
NY [auth DG],
NZ [auth EI],
OBA [auth HE],
OFA [auth LM],
OJA [auth QG],
OMA [auth UA],
OX [auth CE],
PCA [auth II],
PGA [auth MN],
PKA [auth RK],
PY [auth DI],
QDA [auth JM],
QEA [auth KM],
QIA [auth PE],
QLA [auth SM],
QNA [auth VE],
QOA [auth WI],
QZ [auth EK],
RAA [auth GC],
RBA [auth HG],
RFA [auth LN],
RJA [auth QI],
RMA [auth UC],
RV [auth AA],
RW [auth BC],
RX [auth CG],
SGA [auth NA],
SHA [auth OC],
SKA [auth RL],
SNA [auth VG],
SY [auth DK],
TAA [auth GE],
TCA [auth IK],
TDA [auth JO],
TEA [auth KO],
TIA [auth PG],
TLA [auth TA],
TOA [auth WK],
TZ [auth EL],
UBA [auth HI],
UFA [auth MA],
UHA [auth OE],
UJA [auth QJ],
UMA [auth UE],
UV [auth AC],
UW [auth BE],
UX [auth CI],
VCA [auth IM],
VGA [auth NC],
VKA [auth RO],
VY [auth DM],
WAA [auth GG],
WDA [auth JQ],
WEA [auth LA],
WIA [auth PI],
WLA [auth TC],
WNA [auth VI],
WOA [auth WM],
WW [auth BG],
XFA [auth MC],
XHA [auth OG],
XJA [auth QM],
XMA [auth UG],
XV [auth AE],
XZ [auth FC],
YBA [auth HK],
YCA [auth IO],
YDA [auth KA],
YGA [auth NE],
YKA [auth SA],
YX [auth CK],
YY [auth DO],
ZEA [auth LC],
ZLA [auth TE],
ZNA [auth VK],
ZOA [auth WO],
ZW [auth BI]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
ATP

Query on ATP



Download:Ideal Coordinates CCD File
BPA [auth X6],
DPA [auth X7],
FPA [auth X8]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
GDP

Query on GDP



Download:Ideal Coordinates CCD File
ADA [auth IP]
AEA [auth KB]
AHA [auth NF]
ALA [auth SB]
AOA [auth VL]
ADA [auth IP],
AEA [auth KB],
AHA [auth NF],
ALA [auth SB],
AOA [auth VL],
AZ [auth DP],
BBA [auth GJ],
BFA [auth LD],
BJA [auth PL],
BMA [auth TF],
BX [auth BJ],
CAA [auth FF],
CCA [auth HN],
CGA [auth MF],
CIA [auth OJ],
CKA [auth QP],
CNA [auth UJ],
CW [auth AH],
CY [auth CN],
DDA [auth JD],
DEA [auth KD],
DHA [auth NH],
DLA [auth SD],
DOA [auth VN],
DZ [auth EB],
EBA [auth GL],
EFA [auth LF],
EJA [auth PN],
EMA [auth TH],
EX [auth BL],
FAA [auth FH],
FCA [auth IB],
FGA [auth MH],
FIA [auth OL],
FKA [auth RD],
FNA [auth UL],
FW [auth AJ],
FY [auth CP],
GDA [auth JF],
GEA [auth KF],
GHA [auth NJ],
GLA [auth SF],
GOA [auth WB],
GZ [auth ED],
HBA [auth GN],
HFA [auth LH],
HJA [auth PP],
HMA [auth TJ],
HX [auth BN],
IAA [auth FJ],
ICA [auth ID],
IGA [auth MJ],
IIA [auth ON],
IKA [auth RF],
INA [auth UN],
IW [auth AL],
IY [auth DD],
JDA [auth JH],
JEA [auth KH],
JHA [auth NL],
JLA [auth SH],
JOA [auth WD],
JZ [auth EF],
KBA [auth HB],
KFA [auth LJ],
KJA [auth QD],
KMA [auth TL],
KX [auth BP],
LAA [auth FL],
LCA [auth IF],
LGA [auth ML],
LIA [auth OP],
LKA [auth RH],
LNA [auth VB],
LW [auth AN],
LY [auth DF],
MDA [auth JJ],
MEA [auth KJ],
MHA [auth NN],
MIA [auth PB],
MLA [auth SJ],
MOA [auth WF],
MZ [auth EH],
NBA [auth HD],
NFA [auth LL],
NJA [auth QF],
NMA [auth TN],
NX [auth CD],
OAA [auth FN],
OCA [auth IH],
OGA [auth MN],
OKA [auth RJ],
ONA [auth VD],
OW [auth AP],
OY [auth DH],
PAA [auth GB],
PDA [auth JL],
PEA [auth KL],
PHA [auth NP],
PIA [auth PD],
PLA [auth SL],
POA [auth WH],
PW [auth BB],
PZ [auth EJ],
QBA [auth HF],
QFA [auth LN],
QHA [auth OB],
QJA [auth QH],
QMA [auth UB],
QX [auth CF],
RCA [auth IJ],
RGA [auth MP],
RKA [auth RL],
RNA [auth VF],
RY [auth DJ],
SAA [auth GD],
SDA [auth JN],
SEA [auth KN],
SIA [auth PF],
SLA [auth SN],
SOA [auth WJ],
SW [auth BD],
SZ [auth EL],
TBA [auth HH],
TFA [auth LP],
THA [auth OD],
TJA [auth QJ],
TMA [auth UD],
TV [auth AB],
TX [auth CH],
UCA [auth IL],
UGA [auth NB],
UKA [auth RN],
UNA [auth VH],
UY [auth DL],
VAA [auth GF],
VDA [auth JP],
VEA [auth KP],
VIA [auth PH],
VLA [auth TB],
VOA [auth WL],
VW [auth BF],
VZ [auth EN],
WBA [auth HJ],
WFA [auth MB],
WHA [auth OF],
WJA [auth QL],
WMA [auth UF],
WV [auth AD],
WX [auth CJ],
WZ [auth FB],
XCA [auth IN],
XGA [auth ND],
XKA [auth RP],
XNA [auth VJ],
XY [auth DN],
YAA [auth GH],
YEA [auth LB],
YIA [auth PJ],
YLA [auth TD],
YOA [auth WN],
YW [auth BH],
ZBA [auth HL],
ZFA [auth MD],
ZHA [auth OH],
ZJA [auth QN],
ZMA [auth UH],
ZV [auth AF],
ZX [auth CL],
ZZ [auth FD]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
ACA [auth HL]
AFA [auth LC]
AMA [auth TE]
ANA [auth UH]
APA [auth WO]
ACA [auth HL],
AFA [auth LC],
AMA [auth TE],
ANA [auth UH],
APA [auth WO],
AX [auth BI],
BAA [auth FE],
BGA [auth ME],
BIA [auth OI],
BKA [auth QO],
BW [auth AG],
BY [auth CM],
CDA [auth JC],
CEA [auth KC],
CHA [auth NG],
CLA [auth SC],
COA [auth VM],
CPA [auth X6],
CZ [auth EA],
DBA [auth GK],
DFA [auth LE],
DJA [auth PM],
DMA [auth TG],
DX [auth BK],
EAA [auth FG],
ECA [auth HN],
EGA [auth MG],
EIA [auth OK],
EKA [auth RC],
ENA [auth UK],
EOA [auth VN],
EPA [auth X7],
EW [auth AI],
EY [auth CO],
FDA [auth JE],
FEA [auth KE],
FHA [auth NI],
FLA [auth SE],
FZ [auth EC],
GBA [auth GM],
GCA [auth IB],
GFA [auth LG],
GIA [auth OL],
GJA [auth PO],
GMA [auth TI],
GPA [auth X8],
GX [auth BM],
HAA [auth FI],
HGA [auth MI],
HKA [auth RE],
HNA [auth UM],
HW [auth AK],
HY [auth DC],
IDA [auth JG],
IEA [auth KG],
IHA [auth NK],
ILA [auth SG],
IOA [auth WC],
IZ [auth EE],
JBA [auth GO],
JFA [auth LI],
JIA [auth ON],
JJA [auth QC],
JMA [auth TK],
JX [auth BO],
KAA [auth FK],
KCA [auth IE],
KGA [auth MK],
KKA [auth RG],
KNA [auth VA],
KW [auth AM],
KY [auth DE],
LDA [auth JI],
LEA [auth KI],
LHA [auth NM],
LLA [auth SI],
LOA [auth WE],
LZ [auth EG],
MBA [auth HC],
MFA [auth LK],
MJA [auth QE],
MMA [auth TM],
MX [auth CC],
MY [auth DF],
NAA [auth FM],
NCA [auth IG],
NGA [auth MM],
NKA [auth RI],
NNA [auth VC],
NW [auth AO],
ODA [auth JK],
OEA [auth KK],
OHA [auth NO],
OIA [auth PC],
OLA [auth SK],
OOA [auth WG],
OZ [auth EI],
PBA [auth HE],
PFA [auth LM],
PJA [auth QG],
PMA [auth UA],
PNA [auth VE],
PX [auth CE],
QAA [auth GB],
QCA [auth II],
QGA [auth MN],
QKA [auth RK],
QW [auth BB],
QY [auth DI],
RDA [auth JM],
REA [auth KM],
RHA [auth OB],
RIA [auth PE],
RLA [auth SM],
ROA [auth WI],
RZ [auth EK],
SBA [auth HG],
SCA [auth IJ],
SFA [auth LO],
SJA [auth QI],
SMA [auth UC],
SV [auth AA],
SX [auth CG],
TGA [auth NA],
TKA [auth RM],
TNA [auth VG],
TW [auth BD],
TY [auth DK],
UAA [auth GE],
UDA [auth JO],
UEA [auth KO],
UIA [auth PG],
ULA [auth TA],
UOA [auth WK],
UZ [auth EL],
VBA [auth HI],
VFA [auth MA],
VHA [auth OE],
VJA [auth QK],
VMA [auth UE],
VNA [auth VH],
VV [auth AC],
VX [auth CI],
WCA [auth IM],
WGA [auth NC],
WKA [auth RO],
WY [auth DM],
XAA [auth GG],
XBA [auth HJ],
XDA [auth JQ],
XEA [auth LA],
XIA [auth PI],
XLA [auth TC],
XOA [auth WM],
XW [auth BG],
XX [auth CK],
YFA [auth MC],
YHA [auth OG],
YJA [auth QM],
YMA [auth UG],
YNA [auth VJ],
YV [auth AE],
YZ [auth FC],
ZAA [auth GH],
ZCA [auth IO],
ZDA [auth KA],
ZGA [auth NE],
ZIA [auth PK],
ZKA [auth SA],
ZY [auth DO]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-27
    Type: Initial release