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 9UYQ | pdb_00009uyq

Cryo-EM structure of a class C GPCR (Class 2)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9UYQ

This is version 1.1 of the entry. See complete history. 

Literature

CryoEM structure of mGlu6 captures receptor activation prior to G protein coupling.

Lee, S.Y., Chang, C.T., Yun, Y., Ji, J.S., Martemyanov, K.A., Lee, H.H.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-70436-w
  • Primary Citation Related Structures: 
    9LLZ, 9LM0, 9UYO, 9UYP, 9UYQ

  • PubMed Abstract: 

    The metabotropic glutamate receptor 6 (mGlu6) is essential for synaptic communication of rod photoreceptors, and mutations in mGlu6 lead to a blinding disorder. However, its structural organization remains unknown. Here, we present the structure of agonist-bound mGlu6, revealing an asymmetric dimer arrangement in the absence of a G protein. This indicates that agonist binding alone can induce the homodimeric receptor asymmetry in metabotropic glutamate receptors and structurally prime mGlu6 for activation by pre-organizing the transmembrane domain dimer interface for G protein binding. The structure also identifies noncanonical interactions between the cysteine-rich domain and extracellular loop 2, forming a unique interface that likely stabilizes the activation state. Mutational analyses of this interface reveal its role in maintaining rapid Gαo activation and surface targeting. The structure also permits mechanistic investigation of congenital stationary night blindness and reveals diverse effects of pathogenic mutations on surface trafficking, Gαo coupling, and activation dynamics, including unexpected gain-of-function. These results provide critical insight into the intermediate asymmetric structure of mGlu6 and offer a molecular framework for understanding the pathogenesis of inherited retinal disorders.


  • Organizational Affiliation: 
    • Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul, Republic of Korea.

Macromolecule Content 

  • Total Structure Weight: 191.45 kDa 
  • Atom Count: 11,954 
  • Modeled Residue Count: 1,554 
  • Deposited Residue Count: 1,754 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Metabotropic glutamate receptor 6A [auth B],
B [auth A]
877Homo sapiensMutation(s): 0 
Gene Names: GRM6, GPRC1F, MGLUR6
UniProt & NIH Common Fund Data Resources
Find proteins for O15303 (Homo sapiens)
Explore O15303 
Go to UniProtKB:  O15303
PHAROS:  O15303
GTEx:  ENSG00000113262 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15303
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Samsung Science and Technology FoundationKorea, Republic Of--

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-18
    Type: Initial release
  • Version 1.1: 2026-09-30
    Changes: Data collection, Database references