9UWR | pdb_00009uwr

Pictet-Spenglerase AsKslB in complex with product of L-Trp and a-ketoglutaric acid

PDB DOI: https://doi.org/10.2210/pdb9UWR/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Actinosynnema sp. ALI-1.44
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-05-12 Released: 2026-05-27
Deposition Author(s): Qiao, Z., Yang, X.N., Teng, Y.B.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free:
0.252 (Depositor), 0.261 (DCC)
R-Value Work:
0.209 (Depositor), 0.218 (DCC)
R-Value Observed:
0.211 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 9UWR

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structural and functional insights into the iminium ion intermediate in AsKlsB-mediated Pictet-Spengler reaction/chemistry

Qiao, Z., Teng, Y.B., Yang, X.N.

To be published.

Macromolecule Content

Total Structure Weight: 77.72 kDa
Atom Count: 4,928
Modeled Residue Count: 578
Deposited Residue Count: 678
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cucumopine synthase C-terminal helical bundle domain-containing protein	A, B	339	Actinosynnema sp. ALI-1.44	Mutation(s): 0 Gene Names: ALI144C_17030

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1L46 (Subject of Investigation/LOI) Query on A1L46 Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B]	D [auth A], F [auth B]	(1~{S},3~{S})-1-(3-hydroxy-3-oxopropyl)-2,3,4,9-tetrahydropyrido[3,4-b]indole-1,3-dicarboxylic acid C₁₆ H₁₆ N₂ O₆ ZSFFNSLTDHOYOC-ZBEGNZNMSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]
144 Query on 144 Download:Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain C [auth A] MOL2 format, chain E [auth B] MOL2 format, chain C [auth A] mmCIF format, chain E [auth B] mmCIF format, chain C [auth A]	C [auth A], E [auth B]	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM C₄ H₁₂ N O₃ DRDCQJADRSJFFD-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.252 (Depositor), 0.261 (DCC)
R-Value Work: 0.209 (Depositor), 0.218 (DCC)
R-Value Observed: 0.211 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.22	α = 90
b = 59.22	β = 90
c = 332.03	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data scaling
xia2	data reduction
MOLREP	phasing
PDB_EXTRACT	data extraction

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31700650

Revision History (Full details and data files)

Version 1.0: 2026-05-27
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.