9UNW | pdb_00009unw

mouse PDCD5-TRiC complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

PDCD5 promotes substrate release from the TRiC complex in cilia and flagella.

Wei, H.Song, Q.Wang, L.Deng, Q.Wu, B.Chen, Y.Han, T.Guo, Y.Li, Z.Dong, F.Ma, S.Zhao, Q.Shi, X.Pan, C.Jiang, W.Liu, X.Chen, Y.Jiao, R.Yuan, L.Liu, C.Guo, X.Cong, Y.Li, W.

(2026) Mol Cell 86: 376-392.e11

  • DOI: https://doi.org/10.1016/j.molcel.2025.12.012
  • Primary Citation of Related Structures:  
    9UNW

  • PubMed Abstract: 

    Approximately 10% of eukaryotic proteins are folded by the TRiC/CCT complex (TCP1-ring complex, also called CCT for cytosolic chaperonin containing TCP1), and only open-state TRiC can bind with programmed cell death 5 (PDCD5). However, the physiological role of the PDCD5-TRiC interaction remains elusive. Here, we show that PDCD5 is required for flagellum biogenesis and ciliogenesis and present the PDCD5-TRiC structures in their open states at near-atomic resolution. Mechanically, we find that PDCD5 promotes substrates release by competing with PhLP2A to interact with TRiC, and the depletion of PDCD5 traps flagellum- and cilium-associated proteins within TRiC, finally leading to malformed flagella of spermatids and cilia in mouse ciliated cells. Moreover, we demonstrate that the function of PDCD5 in flagellum biogenesis and ciliogenesis depends on the interaction with TRiC by its C terminus. These findings identify PDCD5 as a TRiC regulator to promote a subset of proteins release.


  • Organizational Affiliation
    • Guangzhou Women and Children's Medical Center, Sino-French Hoffmann Institute, Guangzhou Medical University, Guangzhou 510623, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit alphaA [auth C]556Mus musculusMutation(s): 0 
EC: 3.6.1
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IMPC:  MGI:98535
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit betaB [auth G]535Mus musculusMutation(s): 0 
EC: 3.6.1
UniProt
Find proteins for P80314 (Mus musculus)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit gammaC [auth H]545Mus musculusMutation(s): 0 
EC: 3.6.1
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Find proteins for P80318 (Mus musculus)
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IMPC:  MGI:104708
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit deltaD [auth I]539Mus musculusMutation(s): 0 
EC: 3.6.1
UniProt
Find proteins for P80315 (Mus musculus)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit epsilonE [auth F]541Mus musculusMutation(s): 0 
EC: 3.6.1
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IMPC:  MGI:107185
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit zetaF [auth A]531Mus musculusMutation(s): 0 
EC: 3.6.1
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit etaG [auth B]544Mus musculusMutation(s): 0 
EC: 3.6.1
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IMPC:  MGI:107184
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit thetaH [auth E]548Mus musculusMutation(s): 0 
EC: 3.6.1
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Find proteins for P42932 (Mus musculus)
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IMPC:  MGI:107183
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Programmed cell death protein 5I [auth D]171Mus musculusMutation(s): 0 
Gene Names: Pdcd5Tfar19
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Find proteins for P56812 (Mus musculus)
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IMPC:  MGI:1913538
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-25
    Type: Initial release