9UG9 | pdb_00009ug9

The cryo-EM structure of 26S proteasome-Midnolin complex MB state

  • Classification: HYDROLASE
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2025-04-11 Released: 2025-09-10 
  • Deposition Author(s): Wang, H.Y., Xu, W.Q.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC), Other government

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

The cryo-EM structure of 26S proteasome-Midnolin complex MB state

Wang, H.Y., Xu, W.Q.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MidnolinA [auth u]491Homo sapiensMutation(s): 0 
Gene Names: MIDN
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PHAROS:  Q504T8
GTEx:  ENSG00000167470 
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UniProt GroupQ504T8
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 8B [auth d]350Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000099341 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-3C [auth m],
GA [auth M]		255Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100567 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-5D [auth R],
S [auth r]		263Homo sapiensMutation(s): 0 
EC: 3.4.25.1
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GTEx:  ENSG00000100804 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-6E [auth n],
KA [auth N]		239Homo sapiensMutation(s): 0 
EC: 3.4.25.1
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GTEx:  ENSG00000142507 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit 10BF [auth E]389Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100519 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit 4G [auth B]440Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100764 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome complex subunit SEM1H [auth e]70Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000127922 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-7I [auth o],
OA [auth O]		277Homo sapiensMutation(s): 0 
EC: 3.4.25.1
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GTEx:  ENSG00000136930 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-1J [auth S],
U [auth s]		241Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000008018 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit 6BK [auth D]418Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000013275 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit 6AL [auth F]439Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000165916 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-3M [auth p],
QA [auth P]		205Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000277791 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 1N [auth U]953Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000173692 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit 8O [auth C]406Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000087191 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-6CA [auth g],
P [auth G]		246Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100902 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-2Q [auth q],
SA [auth Q]		201Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000126067 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit 7R [auth A]433Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161057 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 3T [auth V]534Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108344 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-4V [auth T],
Y [auth t]		264Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000159377 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
SubstrateW [auth v]15Homo sapiensMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 12X [auth W]456Homo sapiensMutation(s): 0 
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Find proteins for O00232 (Homo sapiens)
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GTEx:  ENSG00000197170 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-2EA [auth h],
Z [auth H]		234Homo sapiensMutation(s): 0 
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Find proteins for P25787 (Homo sapiens)
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GTEx:  ENSG00000106588 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 2AA [auth f]908Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000175166 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 11BA [auth X]422Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108671 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-4DA [auth I],
IA [auth i]		261Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000041357 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 6FA [auth Y]389Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163636 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-7HA [auth J],
MA [auth j]		248Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000101182 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 7JA [auth Z]324Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000103035 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-5LA [auth K],
TA [auth k]		241Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143106 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 13NA [auth a]376Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000185627 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-1PA [auth L],
VA [auth l]		263Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000129084 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 4RA [auth b]377Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000159352 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 14UA [auth c]310Homo sapiensMutation(s): 0 
EC: 3.4.19
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Find proteins for O00487 (Homo sapiens)
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GTEx:  ENSG00000115233 
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP (Subject of Investigation/LOI)
Query on ATP
Download Ideal Coordinates CCD File 
AB [auth A],
YA [auth D],
ZA [auth F]		ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
ADP (Subject of Investigation/LOI)
Query on ADP
Download Ideal Coordinates CCD File 
WA [auth E],
XA [auth B]		ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
ZN (Subject of Investigation/LOI)
Query on ZN
Download Ideal Coordinates CCD File 
BB [auth c]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32000862
Other governmentBX20200351
Other government24ZR1451800
Other government2021kf01

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-10
    Type: Initial release