9U65 | pdb_00009u65

Structure of HN HA at pH 7.0 (conformation2).

PDB DOI: https://doi.org/10.2210/pdb9U65/pdb
EM Map EMD-63896: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Influenza A virus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-03-22 Released: 2026-03-25
Deposition Author(s): Deng, G.J., Sun, H.L., Peng, Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of HN HA at pH 7.0 (conformation2).

Deng, G.J., Sun, H.L., Peng, Q.

To be published.

Macromolecule Content

Total Structure Weight: 184.49 kDa
Atom Count: 10,809
Modeled Residue Count: 1,362
Deposited Residue Count: 1,647
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	A, C [auth B], E [auth C]	327	Influenza A virus	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for A0A6G5UYK1 (Influenza A virus) Explore A0A6G5UYK1 Go to UniProtKB: A0A6G5UYK1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6G5UYK1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	B [auth D], D [auth E], F	222	Influenza A virus	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for A0A6B7KK93 (Influenza A virus) Explore A0A6B7KK93 Go to UniProtKB: A0A6B7KK93
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6B7KK93
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2026-03-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32200752

Revision History (Full details and data files)

Version 1.0: 2026-03-25
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.