9TF1 | pdb_00009tf1

Structure of echovirus 18, activated particle

• PDB DOI: https://doi.org/10.2210/pdb9TF1/pdb
• EM Map EMD-55864: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Echovirus E18
• Mutation(s): No 


• Deposited: 2025-11-26 Released: 2026-06-24 
• Deposition Author(s): Mukhamedova, L., Plevka, P.
• Funding Organization(s): European Research Council (ERC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.44 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Particles of echovirus 18 open to release their genomes in vivo

Mukhamedova, L., Plevka, P., Buchta, D., Fuzik, T., Trebichalska, Z., Novacek, J., Levdansky, Y., Moravcova, J., Hrebik, D., Tollefsrud, T.G., Andersen, J.T.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 180-mer - A60B60C60 Pseudo Symmetry: Icosahedral - I  (Explore in 3D)
Pseudo Stoichiometry: Homo 180-mer - A180 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 87.51 kDa 
• Atom Count: 6,093 
• Modeled Residue Count: 659 
• Deposited Residue Count: 786 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Echovirus 18 viral protein 1	A	287	Echovirus E18	Mutation(s): 0  EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for Q8V635 (Echovirus E18) Explore Q8V635  Go to UniProtKB:  Q8V635

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Echovirus 18 viral protein 2	B	260	Echovirus E18	Mutation(s): 0  EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for Q8V635 (Echovirus E18) Explore Q8V635  Go to UniProtKB:  Q8V635

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Echovirus 18 viral protein 3	C	239	Echovirus E18	Mutation(s): 0  EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for Q8V635 (Echovirus E18) Explore Q8V635  Go to UniProtKB:  Q8V635

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.44 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	5.0.0
MODEL REFINEMENT	PHENIX	1.21_5207

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-06-24 
Deposition Author(s): Mukhamedova, L., Plevka, P.

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Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	--

Revision History  

• Version 1.0: 2026-06-24
  Type: Initial release