Skip to main content

 9T3P | pdb_00009t3p

Nonameric Ena1C ring of Bacillus cereus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9T3P

This is version 1.2 of the entry. See complete history. 

Literature

Spatiotemporal expression of endospore appendages and cryo-EM insights into Ena1C-mediated S-ENA anchoring in Bacillus paranthracis.

Zegeye, E.D., Sleutel, M., Jonsmoen, U.L., Chen, J., Morawska, L.P., Mekonnen, Y.B., Kuipers, O.P., Remaut, H., Aspholm, M.

(2026) Sci Rep 16: 7122-7122

  • DOI: https://doi.org/10.1038/s41598-026-38321-0
  • Primary Citation Related Structures: 
    9T3P

  • PubMed Abstract: 

    The endospores of many Bacillus cereus group species are decorated with highly resilient fibrous structures known as endospore appendages (ENAs), whose precise biological functions remain poorly understood. Structural and genetic studies have identified ena1A, ena1B, and ena1C as essential for forming the longer, thicker, and most abundant staggered (S)-ENA fibers in Bacillus paranthracis, whereas ena3A encodes the major subunit of the shorter, thinner, ladder-like (L)-ENAs. Here, we investigated the spatiotemporal expression dynamics of S- and L-ENA proteins and the specific role of Ena1C in S-ENA biogenesis. Using time-lapse fluorescence microscopy, we observed strict temporal regulation of ena gene expression, with no detectable ENA subunit production before spores became phase-bright. ENAs expression peaked during late sporulation phase, with fluorescence localized around the developing spore until its release; notably, S-ENA subunit expression began approximately one hour earlier than that of L-ENA subunits. Combining cryo-EM, negative-stain transmission electron microscopy, and genetic analyses, we show that Ena1C forms a nonameric ring-like structure required for tethering S-ENA to the spore surface. These findings provide new insights into the regulation of ENAs’ expression during fiber biogenesis and highlight their temporal coordination with spore coat and exosporium development.


  • Organizational Affiliation: 
    • Department of Paraclinical Sciences, Faculty of Veterinary Medicine , Norwegian University of Life Sciences (NMBU) , Ås, 1433, Norway. ephrem.debebe.zegeye@nmbu.no.

Macromolecule Content 

  • Total Structure Weight: 170.36 kDa 
  • Atom Count: 7,407 
  • Modeled Residue Count: 963 
  • Deposited Residue Count: 1,539 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
DUF3992 domain-containing protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I
171Bacillus paranthracisMutation(s): 0 
Gene Names: BACERE00174_03413, FYW06_19465, P6U22_18550
UniProt
Find proteins for A0A5M9GNU2 (Bacillus paranthracis)
Explore A0A5M9GNU2 
Go to UniProtKB:  A0A5M9GNU2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5M9GNU2
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Foundation - Flanders (FWO)Belgium--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-03
    Type: Initial release
  • Version 1.1: 2026-02-18
    Changes: Data collection, Database references
  • Version 1.2: 2026-03-04
    Changes: Data collection, Database references