9SYS | pdb_00009sys

Special vertex of bacteriophage LUZ19 computed in C1 symmetry

PDB DOI: https://doi.org/10.2210/pdb9SYS/pdb
EM Map EMD-55352: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Pseudomonas phage LUZ19
Mutation(s): No

Deposited: 2025-10-14 Released: 2026-07-15
Deposition Author(s): Stefanik Sobotkova, A., Cienikova, Z., Mironova, Y., Fuzik, T., Plevka, P., Novacek, J., Hlavenkova, Z.
Funding Organization(s): Ministry of Education, Youth and Sports of the Czech Republic, European Research Council (ERC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9SYS

This is version 1.0 of the entry. See complete history.

Literature

Structure of bacteriophage LUZ19 native particle

Stefanik Sobotkova, A., Cienikova, Z., Mironova, Y., Fuzik, T., Plevka, P., Novacek, J., Hlavenkova, Z.

To be published.

Macromolecule Content

Total Structure Weight: 1,494.98 kDa
Atom Count: 98,061
Modeled Residue Count: 12,424
Deposited Residue Count: 13,353
Unique protein chains: 3

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	335	Pseudomonas phage LUZ19	Mutation(s): 0
UniProt
Find proteins for A9J7B7 (Pseudomonas phage LUZ19) Explore A9J7B7 Go to UniProtKB: A9J7B7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A9J7B7
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail tubular protein A	KA [auth k] LA [auth l] MA [auth m] P Q KA [auth k], LA [auth l], MA [auth m], P, Q, R, S, T, U, V, W, X	184	Pseudomonas phage LUZ19	Mutation(s): 0
UniProt
Find proteins for A9J7B9 (Pseudomonas phage LUZ19) Explore A9J7B9 Go to UniProtKB: A9J7B9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A9J7B9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Head-tail connector protein	AA [auth a] BA [auth b] CA [auth c] DA [auth d] EA [auth e] AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], Y, Z	510	Pseudomonas phage LUZ19	Mutation(s): 0
UniProt
Find proteins for A9J7B4 (Pseudomonas phage LUZ19) Explore A9J7B4 Go to UniProtKB: A9J7B4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A9J7B4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-07-15

Deposition Author(s):

Stefanik Sobotkova, A.

Funding Organization	Location	Grant Number
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	--
European Research Council (ERC)	European Union	--

Revision History (Full details and data files)

Version 1.0: 2026-07-15
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.