9SRK | pdb_00009srk

Structure of collectin-11 (CL-11) carbohydrate-recognition domain in complex with L-fucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.198 (Depositor), 0.202 (DCC) 
  • R-Value Work: 
    0.158 (Depositor), 0.162 (DCC) 
  • R-Value Observed: 
    0.160 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


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Literature

Glycan recognition by collectin-11 drives SARS-CoV-2 infectivity and membrane injury of respiratory epithelial cells.

Polycarpou, A.Wagner-Gamble, T.Greenlaw, R.O'Neill, L.Kanabar, V.Alrehaili, A.Jeon, Y.Baker, J.Bafadhel, M.Khan, H.Malim, M.H.Romano, M.Farrar, C.A.Smolarek, D.Martinez-Nunez, R.Doores, K.J.Wallis, R.Klavinskis, L.S.Sacks, S.H.

(2025) Proc Natl Acad Sci U S A 122: e2521209122-e2521209122

  • DOI: https://doi.org/10.1073/pnas.2521209122
  • Primary Citation of Related Structures:  
    9SRK

  • PubMed Abstract: 

    SARS-CoV-2 respiratory-tract infection affects both vaccinated and unvaccinated persons suggesting factors besides adaptive immunity are operative. We investigated the role of collectin-11 (CL-11), an epithelial-secreted carbohydrate-binding lectin that drives innate immunity and eliminates pathogens by complement activation. SARS-CoV-2, despite binding CL-11 to activate complement, was resistant to lysis. Remarkably, opsonization by CL-11 enhanced virus production by infected respiratory epithelial cells independently of complement. Furthermore, infected cells expressing SARS-CoV-2 spike protein displayed enhanced vulnerability to CL-11 binding and membrane attack by complement. The mechanism of enhanced infectivity was ablated in the presence of L-fucose, which occupied the extended carbohydrate-binding cleft of CL-11 in a crystallographic analysis of complexes between L-fucose and CL-11. Our study suggests pathogenicity of SARS-CoV-2 is related to complement-resistance together with enhanced infectivity and injury of respiratory epithelial cells mediated by locally released CL-11.


  • Organizational Affiliation
    • Peter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College, London SE1 9RT, United Kingdom.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Collectin-11
A, B
127Homo sapiensMutation(s): 0 
Gene Names: COLEC11UNQ596/PRO1182
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BWP8 (Homo sapiens)
Explore Q9BWP8 
Go to UniProtKB:  Q9BWP8
PHAROS:  Q9BWP8
GTEx:  ENSG00000118004 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BWP8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FUL (Subject of Investigation/LOI)
Query on FUL

Download Ideal Coordinates CCD File 
G [auth A],
H [auth A],
O [auth B],
Q [auth B]
beta-L-fucopyranose
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
FUC (Subject of Investigation/LOI)
Query on FUC

Download Ideal Coordinates CCD File 
F [auth A],
J [auth A],
N [auth B],
P [auth B]
alpha-L-fucopyranose
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
TRS (Subject of Investigation/LOI)
Query on TRS

Download Ideal Coordinates CCD File 
I [auth A]2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
C [auth A]
D [auth A]
E [auth A]
K [auth B]
L [auth B]
C [auth A],
D [auth A],
E [auth A],
K [auth B],
L [auth B],
M [auth B]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.198 (Depositor), 0.202 (DCC) 
  • R-Value Work:  0.158 (Depositor), 0.162 (DCC) 
  • R-Value Observed: 0.160 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 28.09α = 90
b = 105.76β = 93.94
c = 45.32γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
DIALSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/M012263/1

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-05
    Type: Initial release