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 9SMD | pdb_00009smd

Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)

  • Classification: TRANSLATION
  • Organism(s): Mycoplasmoides pneumoniae M129
  • Mutation(s): No 

  • Deposited: 2025-09-07 Released: 2026-09-23 
  • Deposition Author(s): Xue, L., Jensen, R.K., Mahamid, J.
  • Funding Organization(s): Chan Zuckerberg Initiative, German Research Foundation (DFG), Ministry of Science and Technology (MoST, China), Independent Research Fund Denmark - Medical Sciences

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

In-cell discovery and characterization of a non-canonical bacterial protein translocation-folding complex

Jensen, R., Xue, L., Marotta, F., Somody, J.C., Selkrig, J., Lenz, S., Rappsilber, J., Savitski, M.M., Kosinski, J., Typas, A., Zimmermann-Kogadeeva, M., Bork, P., Mahamid, J.

To be published.

Macromolecule Content 

  • Total Structure Weight: 3,552.72 kDa 
  • Atom Count: 202,419 
  • Modeled Residue Count: 17,565 
  • Deposited Residue Count: 19,813 
  • Unique protein chains: 59
  • Unique nucleic acid chains: 8

Macromolecules


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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL34A [auth 0]48Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78006 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L35B [auth 1]59Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75447 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein translocase subunit SecYC [auth 10]477Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q59548 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Probable protein-export membrane protein SecGD [auth 11]76Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q9EXD0 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
SecEE [auth 12]125Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75048 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
SecDFF [auth 17]971Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75387 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L36G [auth 2]37Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P52864 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein translocase subunit SecAN [auth 9]808Mycoplasmoides pneumoniae M129Mutation(s): 0 
EC: 7.4.2.8
UniProt
Find proteins for P75559 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S2O [auth A]294Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75560 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S5P [auth AA]219Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50301 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L31JB [auth x],
R [auth AC]
97Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78020 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S4S [auth C]205Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P46775 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S6T [auth E]215Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75543 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S7U [auth F]155Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75545 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S8V [auth G]142Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50304 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9W [auth H]132Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75179 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S10X [auth I]108Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75581 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S11Y [auth J]121Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50296 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S12Z [auth K]139Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75546 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S13AA [auth L]124Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50297 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZBA [auth M]61Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50305 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S15CA [auth N]86Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75173 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S16DA [auth O]94Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for A0A0H3DLS7 (Mycoplasmoides pneumoniae (strain ATCC 15531 / DSM 23978 / CIP 103766 / NBRC 14401 / NCTC 10119 / FH))
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S17EA [auth P]85Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50309 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 32
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S18FA [auth Q]104Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75541 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S19GA [auth R]87Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75576 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 34
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S20HA [auth S]87Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75237 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 35
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S21IA [auth T]60Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P57079 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 36
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S3JA [auth W]273Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P41205 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 38
MoleculeChains  Sequence LengthOrganismDetailsImage
Nascent peptideLA [auth Z]36Mycoplasmoides pneumoniae M129Mutation(s): 0 
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Entity ID: 39
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L2MA [auth a]287Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75577 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 40
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L3NA [auth b]287Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 41
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L4OA [auth c]212Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 42
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L5PA [auth d]180Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 43
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L6QA [auth e]184Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 44
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L9RA [auth f]149Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L10SA [auth g]161Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 46
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L11TA [auth h]137Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 47
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L13UA [auth i]146Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L14VA [auth j]122Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50308 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 49
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L15WA [auth k]151Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L16XA [auth l]139Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L17YA [auth m]124Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL18ZA [auth n]116Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L19AB [auth o]119Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75133 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 54
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L20BB [auth p]127Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78023 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 55
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L21CB [auth q]100Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78026 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 56
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L22DB [auth r]159Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75575 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 57
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL23EB [auth s]194Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75578 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 58
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L24FB [auth t]111Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50307 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 59
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L27GB [auth u]104Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75458 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 60
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L28HB [auth v]65Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75171 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 61
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L29IB [auth w]111Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50310 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 62
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L32KB [auth y]57Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75238 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 63
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L33 1LB [auth z]53Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78015 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 64
MoleculeChains  Sequence LengthOrganismDetailsImage
Uncharacterized lipoprotein MG307 homologMB [auth 13]1,217Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75342 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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UniProt GroupP75342
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Entity ID: 65
MoleculeChains  Sequence LengthOrganismDetailsImage
Uncharacterized lipoprotein MG309 homologNB [auth 14]1,298Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75334 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 66
MoleculeChains  Sequence LengthOrganismDetailsImage
Uncharacterized lipoprotein MG338 homologOB [auth 15]1,274Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75296 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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Entity ID: 67
MoleculeChains  Sequence LengthOrganismDetailsImage
Uncharacterized lipoprotein MG348 homologPB [auth 18],
QB [auth 16]
276Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75255 (Mycoplasmoides pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
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UniProt GroupP75255
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Entity ID: 8
MoleculeChains LengthOrganismImage
23S ribosomal RNAH [auth 3]2,907Mycoplasmoides pneumoniae M129
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Entity ID: 9
MoleculeChains LengthOrganismImage
5S ribosomal RNAI [auth 4]108Mycoplasmoides pneumoniae M129
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Entity ID: 10
MoleculeChains LengthOrganismImage
16S ribosomal RNAJ [auth 5]1,523Mycoplasmoides pneumoniae M129
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Entity ID: 11
MoleculeChains LengthOrganismImage
16S ribosomal RNAK [auth 6]1,523Mycoplasmoides pneumoniae M129
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Entity ID: 12
MoleculeChains LengthOrganismImage
tRNA-Asp (P-site)L [auth 7]76Mycoplasmoides pneumoniae M129
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Entity ID: 13
MoleculeChains LengthOrganismImage
tRNA-Lys (A-site)M [auth 8]76Mycoplasmoides pneumoniae M129
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Entity ID: 17
MoleculeChains LengthOrganismImage
mRNAQ [auth AB]21Mycoplasmoides pneumoniae M129
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Entity ID: 37
MoleculeChains LengthOrganismImage
mRNAKA [auth Y]21Mycoplasmoides pneumoniae M129
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Reference Sequence

Small Molecules

Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PUT

Query on PUT



Download:Ideal Coordinates CCD File
CK [auth 3]
GK [auth 5]
HO [auth b]
JK [auth 5]
JL [auth 5]
CK [auth 3],
GK [auth 5],
HO [auth b],
JK [auth 5],
JL [auth 5],
LK [auth 5],
NL [auth 5],
OJ [auth 3],
PI [auth 3],
TJ [auth 3],
XJ [auth 3],
YJ [auth 3]
1,4-DIAMINOBUTANE
C4 H12 N2
KIDHWZJUCRJVML-UHFFFAOYSA-N
ZN

Query on ZN



Download:Ideal Coordinates CCD File
CO [auth M]
EO [auth Q]
KO [auth x]
LO [auth x]
OO [auth y]
CO [auth M],
EO [auth Q],
KO [auth x],
LO [auth x],
OO [auth y],
PO [auth z],
RB [auth 2]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K

Query on K



Download:Ideal Coordinates CCD File
GJ [auth 3]POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
AC [auth 3]
AD [auth 3]
AE [auth 3]
AF [auth 3]
AG [auth 3]
AC [auth 3],
AD [auth 3],
AE [auth 3],
AF [auth 3],
AG [auth 3],
AH [auth 3],
AI [auth 3],
AJ [auth 3],
AK [auth 3],
AL [auth 5],
AM [auth 5],
AN [auth 5],
AO [auth AB],
BC [auth 3],
BD [auth 3],
BE [auth 3],
BF [auth 3],
BG [auth 3],
BH [auth 3],
BI [auth 3],
BJ [auth 3],
BK [auth 3],
BL [auth 5],
BM [auth 5],
BN [auth 5],
BO [auth K],
CC [auth 3],
CD [auth 3],
CE [auth 3],
CF [auth 3],
CG [auth 3],
CH [auth 3],
CI [auth 3],
CJ [auth 3],
CL [auth 5],
CM [auth 5],
CN [auth 5],
DC [auth 3],
DD [auth 3],
DE [auth 3],
DF [auth 3],
DG [auth 3],
DH [auth 3],
DI [auth 3],
DJ [auth 3],
DK [auth 3],
DL [auth 5],
DM [auth 5],
DN [auth 5],
DO [auth P],
EC [auth 3],
ED [auth 3],
EE [auth 3],
EF [auth 3],
EG [auth 3],
EH [auth 3],
EI [auth 3],
EJ [auth 3],
EK [auth 4],
EL [auth 5],
EM [auth 5],
EN [auth 5],
FC [auth 3],
FD [auth 3],
FE [auth 3],
FF [auth 3],
FG [auth 3],
FH [auth 3],
FI [auth 3],
FJ [auth 3],
FK [auth 5],
FL [auth 5],
FM [auth 5],
FN [auth 5],
FO [auth Y],
GC [auth 3],
GD [auth 3],
GE [auth 3],
GF [auth 3],
GG [auth 3],
GH [auth 3],
GI [auth 3],
GL [auth 5],
GM [auth 5],
GN [auth 5],
GO [auth b],
HC [auth 3],
HD [auth 3],
HE [auth 3],
HF [auth 3],
HG [auth 3],
HH [auth 3],
HI [auth 3],
HJ [auth 3],
HK [auth 5],
HL [auth 5],
HM [auth 5],
HN [auth 5],
IC [auth 3],
ID [auth 3],
IE [auth 3],
IF [auth 3],
IG [auth 3],
IH [auth 3],
II [auth 3],
IJ [auth 3],
IK [auth 5],
IL [auth 5],
IM [auth 5],
IN [auth 5],
IO [auth b],
JC [auth 3],
JD [auth 3],
JE [auth 3],
JF [auth 3],
JG [auth 3],
JH [auth 3],
JI [auth 3],
JJ [auth 3],
JM [auth 5],
JN [auth 5],
JO [auth i],
KC [auth 3],
KD [auth 3],
KE [auth 3],
KF [auth 3],
KG [auth 3],
KH [auth 3],
KI [auth 3],
KJ [auth 3],
KK [auth 5],
KL [auth 5],
KM [auth 5],
KN [auth 5],
LC [auth 3],
LD [auth 3],
LE [auth 3],
LF [auth 3],
LG [auth 3],
LH [auth 3],
LI [auth 3],
LJ [auth 3],
LL [auth 5],
LM [auth 5],
LN [auth 5],
MC [auth 3],
MD [auth 3],
ME [auth 3],
MF [auth 3],
MG [auth 3],
MH [auth 3],
MI [auth 3],
MJ [auth 3],
MK [auth 5],
ML [auth 5],
MM [auth 5],
MN [auth 5],
MO [auth y],
NC [auth 3],
ND [auth 3],
NE [auth 3],
NF [auth 3],
NG [auth 3],
NH [auth 3],
NI [auth 3],
NJ [auth 3],
NK [auth 5],
NM [auth 5],
NN [auth 5],
NO [auth y],
OC [auth 3],
OD [auth 3],
OE [auth 3],
OF [auth 3],
OG [auth 3],
OH [auth 3],
OI [auth 3],
OK [auth 5],
OL [auth 5],
OM [auth 5],
ON [auth 5],
PC [auth 3],
PD [auth 3],
PE [auth 3],
PF [auth 3],
PG [auth 3],
PH [auth 3],
PJ [auth 3],
PK [auth 5],
PL [auth 5],
PM [auth 5],
PN [auth 5],
QC [auth 3],
QD [auth 3],
QE [auth 3],
QF [auth 3],
QG [auth 3],
QH [auth 3],
QI [auth 3],
QJ [auth 3],
QK [auth 5],
QL [auth 5],
QM [auth 5],
QN [auth 5],
RC [auth 3],
RD [auth 3],
RE [auth 3],
RF [auth 3],
RG [auth 3],
RH [auth 3],
RI [auth 3],
RJ [auth 3],
RK [auth 5],
RL [auth 5],
RM [auth 5],
RN [auth 5],
SB [auth 3],
SC [auth 3],
SD [auth 3],
SE [auth 3],
SF [auth 3],
SG [auth 3],
SH [auth 3],
SI [auth 3],
SJ [auth 3],
SK [auth 5],
SL [auth 5],
SM [auth 5],
SN [auth 5],
TB [auth 3],
TC [auth 3],
TD [auth 3],
TE [auth 3],
TF [auth 3],
TG [auth 3],
TH [auth 3],
TI [auth 3],
TK [auth 5],
TL [auth 5],
TM [auth 5],
TN [auth 5],
UB [auth 3],
UC [auth 3],
UD [auth 3],
UE [auth 3],
UF [auth 3],
UG [auth 3],
UH [auth 3],
UI [auth 3],
UJ [auth 3],
UK [auth 5],
UL [auth 5],
UM [auth 5],
UN [auth 6],
VB [auth 3],
VC [auth 3],
VD [auth 3],
VE [auth 3],
VF [auth 3],
VG [auth 3],
VH [auth 3],
VI [auth 3],
VJ [auth 3],
VK [auth 5],
VL [auth 5],
VM [auth 5],
VN [auth 7],
WB [auth 3],
WC [auth 3],
WD [auth 3],
WE [auth 3],
WF [auth 3],
WG [auth 3],
WH [auth 3],
WI [auth 3],
WJ [auth 3],
WK [auth 5],
WL [auth 5],
WM [auth 5],
WN [auth 7],
XB [auth 3],
XC [auth 3],
XD [auth 3],
XE [auth 3],
XF [auth 3],
XG [auth 3],
XH [auth 3],
XI [auth 3],
XK [auth 5],
XL [auth 5],
XM [auth 5],
XN [auth 7],
YB [auth 3],
YC [auth 3],
YD [auth 3],
YE [auth 3],
YF [auth 3],
YG [auth 3],
YH [auth 3],
YI [auth 3],
YK [auth 5],
YL [auth 5],
YM [auth 5],
YN [auth 8],
ZB [auth 3],
ZC [auth 3],
ZD [auth 3],
ZE [auth 3],
ZF [auth 3],
ZG [auth 3],
ZH [auth 3],
ZI [auth 3],
ZJ [auth 3],
ZK [auth 5],
ZL [auth 5],
ZM [auth 5],
ZN [auth AB]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
UNK
Query on UNK
LA [auth Z]L-PEPTIDE LINKINGC4 H9 N O2

--

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.8

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chan Zuckerberg InitiativeUnited States2021-234620
German Research Foundation (DFG)Germany426290502
Ministry of Science and Technology (MoST, China)China2024YFA1306200
Independent Research Fund Denmark - Medical SciencesDenmark0164-00010A

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-23
    Type: Initial release