9SHY | pdb_00009shy

Cryo-EM structure of the catalytic core of human telomerase at the initiation state of the repeat addition cycle


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.53 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures of nucleotide-bound human telomerase at several steps of its telomeric DNA repeat addition cycle.

Balch, S.Franco-Echevarria, E.Ghanim, G.E.Kretsch, R.C.Das, R.Nguyen, T.H.D.

(2026) Nat Commun 17: 1847-1847

  • DOI: https://doi.org/10.1038/s41467-026-68560-8
  • Primary Citation of Related Structures:  
    9SHY, 9SHZ, 9SI0

  • PubMed Abstract: 

    In most eukaryotes, the reverse transcriptase telomerase counteracts telomere shortening by processively adding telomeric DNA repeat sequences to chromosome ends. Telomerase activity depends on the telomerase reverse transcriptase (TERT) and the telomerase RNA (hTR in humans). Processive telomere elongation is critical for genome stability, and defects in this mechanism are linked to cellular dysfunction and human disease. However, the structural basis for telomerase repeat addition processivity in humans has remained elusive. Here, we present cryo-electron microscopy structures of human telomerase bound to telomeric DNA and an incoming nucleotide, captured at three distinct stages of its repeat addition cycle: initiation, elongation, and pre-termination. Across these states, the TERT active site maintains a conserved architecture that stabilises a short DNA-RNA duplex of constant length of four base-pairs. Beyond the active site, we identify dynamic structural features in both TERT and hTR that facilitate substrate engagement and RNA template repositioning, thereby supporting the synthesis of successive telomeric repeats. Together, these structures provide key insights into how human telomerase achieves its unique processivity to maintain telomere length and genome integrity.


  • Organizational Affiliation
    • Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, UK.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase reverse transcriptase1,132Homo sapiensMutation(s): 0 
Gene Names: TERTEST2TCS1TRT
EC: 2.7.7.49
UniProt & NIH Common Fund Data Resources
Find proteins for O14746 (Homo sapiens)
Explore O14746 
Go to UniProtKB:  O14746
PHAROS:  O14746
GTEx:  ENSG00000164362 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14746
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2AB [auth L]130Homo sapiensMutation(s): 0 
UniProt
Find proteins for B2R5B3 (Homo sapiens)
Explore B2R5B3 
Go to UniProtKB:  B2R5B3
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UniProt GroupB2R5B3
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2BC [auth M]166Homo sapiensMutation(s): 0 
UniProt
Find proteins for B4DR52 (Homo sapiens)
Explore B4DR52 
Go to UniProtKB:  B4DR52
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UniProt GroupB4DR52
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Adrenocortical dysplasia protein homologE [auth O]458Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q96AP0 (Homo sapiens)
Explore Q96AP0 
Go to UniProtKB:  Q96AP0
PHAROS:  Q96AP0
GTEx:  ENSG00000102977 
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UniProt GroupQ96AP0
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Entity ID: 4
MoleculeChains LengthOrganismImage
DNA (5'-D(P*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3')D [auth N]34Homo sapiens
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Entity ID: 6
MoleculeChains LengthOrganismImage
hTR, human telomerase RNAF [auth B]451Homo sapiens
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
1GC (Subject of Investigation/LOI)
Query on 1GC

Download Ideal Coordinates CCD File 
G [auth A]2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine
C11 H18 N5 O12 P3
JTBKCZGNQPBEJY-RRKCRQDMSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.53 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8
MODEL REFINEMENTServalcat0.4.70
RECONSTRUCTIONRELION5.0

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
UK Research and Innovation (UKRI)United KingdomMC_UP_1201/19
European Molecular Biology Organization (EMBO)European UnionYoung Investigator Program Award
Wellcome TrustUnited Kingdom226015/Z/22/Z
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States2R35GM122579
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-28
    Type: Initial release
  • Version 1.1: 2026-02-04
    Changes: Data collection, Database references
  • Version 1.2: 2026-03-04
    Changes: Data collection, Database references