9SHJ | pdb_00009shj

ATP-bound human mitochondrial Hsp60-Hsp10 double-ring complex (D7)

PDB DOI: https://doi.org/10.2210/pdb9SHJ/pdb
EM Map EMD-54901: EMDB EMDataResource

Classification: CHAPERONE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-08-27 Released: 2025-12-10
Deposition Author(s): Lopez-Alonso, J.P., Tascon, I., Ubarretxena-Belandia, I.
Funding Organization(s): Ministerio de Ciencia e Innovacion (MCIN)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural remodeling of the mitochondrial protein biogenesis machinery upon proteostatic stress

Ehses, K., Lopez-Alonso, J.P., Gonzalez, A., Tascon, I., Ubarretxena-Belandia, I., Fernandez-Busnadiego, R.

To be published.

Macromolecule Content

Total Structure Weight: 793.87 kDa
Atom Count: 56,446
Modeled Residue Count: 7,378
Deposited Residue Count: 7,378
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60 kDa heat shock protein, mitochondrial	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	527	Homo sapiens	Mutation(s): 0 Gene Names: HSPD1, HSP60 EC: 5.6.1.7
UniProt & NIH Common Fund Data Resources
Find proteins for P10809 (Homo sapiens) Explore P10809 Go to UniProtKB: P10809
PHAROS: P10809 GTEx: ENSG00000144381
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P10809
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain JA [auth H] SDF format, chain MA [auth I] SDF format, chain YA [auth M] SDF format, chain X [auth D] SDF format, chain VA [auth L] SDF format, chain U [auth C] SDF format, chain SA [auth K] SDF format, chain R [auth B] SDF format, chain PA [auth J] SDF format, chain O [auth A] SDF format, chain GA [auth G] SDF format, chain DA [auth F] SDF format, chain BB [auth N] SDF format, chain AA [auth E] MOL2 format, chain JA [auth H] MOL2 format, chain MA [auth I] MOL2 format, chain YA [auth M] MOL2 format, chain X [auth D] MOL2 format, chain VA [auth L] MOL2 format, chain U [auth C] MOL2 format, chain SA [auth K] MOL2 format, chain R [auth B] MOL2 format, chain PA [auth J] MOL2 format, chain O [auth A] MOL2 format, chain GA [auth G] MOL2 format, chain DA [auth F] MOL2 format, chain BB [auth N] MOL2 format, chain AA [auth E] mmCIF format, chain JA [auth H] mmCIF format, chain MA [auth I] mmCIF format, chain YA [auth M] mmCIF format, chain X [auth D] mmCIF format, chain VA [auth L] mmCIF format, chain U [auth C] mmCIF format, chain SA [auth K] mmCIF format, chain R [auth B] mmCIF format, chain PA [auth J] mmCIF format, chain O [auth A] mmCIF format, chain GA [auth G] mmCIF format, chain DA [auth F] mmCIF format, chain BB [auth N] mmCIF format, chain AA [auth E]	AA [auth E] BB [auth N] DA [auth F] GA [auth G] JA [auth H] AA [auth E], BB [auth N], DA [auth F], GA [auth G], JA [auth H], MA [auth I], O [auth A], PA [auth J], R [auth B], SA [auth K], U [auth C], VA [auth L], X [auth D], YA [auth M]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain AA [auth E] Focus chain BB [auth N] Focus chain DA [auth F] Focus chain GA [auth G] Focus chain JA [auth H] Focus chain MA [auth I] Focus chain O [auth A] Focus chain PA [auth J] Focus chain R [auth B] Focus chain SA [auth K] Focus chain U [auth C] Focus chain VA [auth L] Focus chain X [auth D] Focus chain YA [auth M] Interactions & Density Focus chain AA [auth E] Focus chain BB [auth N] Focus chain DA [auth F] Focus chain GA [auth G] Focus chain JA [auth H] Focus chain MA [auth I] Focus chain O [auth A] Focus chain PA [auth J] Focus chain R [auth B] Focus chain SA [auth K] Focus chain U [auth C] Focus chain VA [auth L] Focus chain X [auth D] Focus chain YA [auth M]
K (Subject of Investigation/LOI) Query on K Download Ideal Coordinates CCD File SDF format, chain Z [auth D] SDF format, chain XA [auth L] SDF format, chain W [auth C] SDF format, chain UA [auth K] SDF format, chain T [auth B] SDF format, chain RA [auth J] SDF format, chain Q [auth A] SDF format, chain OA [auth I] SDF format, chain LA [auth H] SDF format, chain IA [auth G] SDF format, chain FA [auth F] SDF format, chain DB [auth N] SDF format, chain CA [auth E] SDF format, chain AB [auth M] MOL2 format, chain Z [auth D] MOL2 format, chain XA [auth L] MOL2 format, chain W [auth C] MOL2 format, chain UA [auth K] MOL2 format, chain T [auth B] MOL2 format, chain RA [auth J] MOL2 format, chain Q [auth A] MOL2 format, chain OA [auth I] MOL2 format, chain LA [auth H] MOL2 format, chain IA [auth G] MOL2 format, chain FA [auth F] MOL2 format, chain DB [auth N] MOL2 format, chain CA [auth E] MOL2 format, chain AB [auth M] mmCIF format, chain Z [auth D] mmCIF format, chain XA [auth L] mmCIF format, chain W [auth C] mmCIF format, chain UA [auth K] mmCIF format, chain T [auth B] mmCIF format, chain RA [auth J] mmCIF format, chain Q [auth A] mmCIF format, chain OA [auth I] mmCIF format, chain LA [auth H] mmCIF format, chain IA [auth G] mmCIF format, chain FA [auth F] mmCIF format, chain DB [auth N] mmCIF format, chain CA [auth E] mmCIF format, chain AB [auth M]	AB [auth M] CA [auth E] DB [auth N] FA [auth F] IA [auth G] AB [auth M], CA [auth E], DB [auth N], FA [auth F], IA [auth G], LA [auth H], OA [auth I], Q [auth A], RA [auth J], T [auth B], UA [auth K], W [auth C], XA [auth L], Z [auth D]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain AB [auth M] Focus chain CA [auth E] Focus chain DB [auth N] Focus chain FA [auth F] Focus chain IA [auth G] Focus chain LA [auth H] Focus chain OA [auth I] Focus chain Q [auth A] Focus chain RA [auth J] Focus chain T [auth B] Focus chain UA [auth K] Focus chain W [auth C] Focus chain XA [auth L] Focus chain Z [auth D] Interactions & Density Focus chain AB [auth M] Focus chain CA [auth E] Focus chain DB [auth N] Focus chain FA [auth F] Focus chain IA [auth G] Focus chain LA [auth H] Focus chain OA [auth I] Focus chain Q [auth A] Focus chain RA [auth J] Focus chain T [auth B] Focus chain UA [auth K] Focus chain W [auth C] Focus chain XA [auth L] Focus chain Z [auth D]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain KA [auth H] SDF format, chain TA [auth K] SDF format, chain V [auth C] SDF format, chain ZA [auth M] SDF format, chain Y [auth D] SDF format, chain WA [auth L] SDF format, chain S [auth B] SDF format, chain QA [auth J] SDF format, chain P [auth A] SDF format, chain NA [auth I] SDF format, chain HA [auth G] SDF format, chain EA [auth F] SDF format, chain CB [auth N] SDF format, chain BA [auth E] MOL2 format, chain KA [auth H] MOL2 format, chain TA [auth K] MOL2 format, chain V [auth C] MOL2 format, chain ZA [auth M] MOL2 format, chain Y [auth D] MOL2 format, chain WA [auth L] MOL2 format, chain S [auth B] MOL2 format, chain QA [auth J] MOL2 format, chain P [auth A] MOL2 format, chain NA [auth I] MOL2 format, chain HA [auth G] MOL2 format, chain EA [auth F] MOL2 format, chain CB [auth N] MOL2 format, chain BA [auth E] mmCIF format, chain KA [auth H] mmCIF format, chain TA [auth K] mmCIF format, chain V [auth C] mmCIF format, chain ZA [auth M] mmCIF format, chain Y [auth D] mmCIF format, chain WA [auth L] mmCIF format, chain S [auth B] mmCIF format, chain QA [auth J] mmCIF format, chain P [auth A] mmCIF format, chain NA [auth I] mmCIF format, chain HA [auth G] mmCIF format, chain EA [auth F] mmCIF format, chain CB [auth N] mmCIF format, chain BA [auth E]	BA [auth E] CB [auth N] EA [auth F] HA [auth G] KA [auth H] BA [auth E], CB [auth N], EA [auth F], HA [auth G], KA [auth H], NA [auth I], P [auth A], QA [auth J], S [auth B], TA [auth K], V [auth C], WA [auth L], Y [auth D], ZA [auth M]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain BA [auth E] Focus chain CB [auth N] Focus chain EA [auth F] Focus chain HA [auth G] Focus chain KA [auth H] Focus chain NA [auth I] Focus chain P [auth A] Focus chain QA [auth J] Focus chain S [auth B] Focus chain TA [auth K] Focus chain V [auth C] Focus chain WA [auth L] Focus chain Y [auth D] Focus chain ZA [auth M] Interactions & Density Focus chain BA [auth E] Focus chain CB [auth N] Focus chain EA [auth F] Focus chain HA [auth G] Focus chain KA [auth H] Focus chain NA [auth I] Focus chain P [auth A] Focus chain QA [auth J] Focus chain S [auth B] Focus chain TA [auth K] Focus chain V [auth C] Focus chain WA [auth L] Focus chain Y [auth D] Focus chain ZA [auth M]