9S9J | pdb_00009s9j

S. islandicus CdvB (closed)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 
    0.266 (Depositor), 0.287 (DCC) 
  • R-Value Work: 
    0.243 (Depositor), 0.264 (DCC) 
  • R-Value Observed: 
    0.244 (Depositor) 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Molecular structure of the ESCRT-III-based archaeal CdvAB cell division machinery.

Drobnic, T.Salzer, R.Nierhaus, T.Jiang, M.K.X.Bellini, D.Steindorf, A.Albers, S.V.Baum, B.Lowe, J.

(2026) Proc Natl Acad Sci U S A 123: e2525941123-e2525941123

  • DOI: https://doi.org/10.1073/pnas.2525941123
  • Primary Citation of Related Structures:  
    9S97, 9S98, 9S99, 9S9G, 9S9H, 9S9I, 9S9J, 9S9K

  • PubMed Abstract: 

    Most prokaryotes divide using filaments of the tubulin-like FtsZ protein, while some archaea employ instead ESCRT-III-like proteins and their filaments for cell division and cytokinesis. The alternative archaeal system comprises Cdv proteins and is thought to bear some resemblance to ESCRT-III-based membrane remodeling in other domains of life, including eukaryotes, especially during abscission. Here, we present biochemical, crystallographic, and cryo-EM studies of the Sulfolobus Cdv machinery. CdvA, an early non-ESCRT component, adopts a PRC-domain/coiled-coil fold and polymerizes into long double-stranded helical filaments, mainly via hydrophobic interfaces. Monomeric CdvB adopts the canonical ESCRT-III fold in both a closed and a distinct "semiopen" conformation. Soluble CdvB2 filaments are composed of subunits in the closed state, appearing to transition to the open, active state only when polymerized on membranes. Short N-terminal amphipathic helices in all CdvB paralogues, B, B1, and B2, mediate membrane binding and are required for liposome recruitment in vitro. We provide a molecular overview of archaeal ESCRT-III-based cytokinesis machinery, the definitive demonstration that CdvB proteins are bona fide ESCRT-III homologues, and reveal the molecular basis for membrane engagement. Thus, we illuminate conserved principles of ESCRT-mediated membrane remodeling and extend them to an anciently diverged archaeal lineage.


  • Organizational Affiliation
    • Medical Research Council Laboratory of Molecular Biology, Structural Studies Division, Cambridge CB2 0QH, United Kingdom.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division protein CdvB, Vps2 like protein193Saccharolobus islandicusMutation(s): 2 
Gene Names: SiRe_1174
UniProt
Find proteins for F0NEW1 (Saccharolobus islandicus (strain REY15A))
Explore F0NEW1 
Go to UniProtKB:  F0NEW1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF0NEW1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free:  0.266 (Depositor), 0.287 (DCC) 
  • R-Value Work:  0.243 (Depositor), 0.264 (DCC) 
  • R-Value Observed: 0.244 (Depositor) 
Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 59.354α = 90
b = 59.354β = 90
c = 124.368γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
CRANK2phasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomU105184326
Wellcome TrustUnited Kingdom227876/Z/23/Z
Wellcome TrustUnited Kingdom203276/Z/16/Z
Volkswagen FoundationGermany94933
Wellcome TrustUnited Kingdom222460/Z/21/Z)
UK Research and Innovation (UKRI)United KingdomMC_UP_1201/27

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-28
    Type: Initial release