9S9B | pdb_00009s9b

asymmetric unit of bacteriophage LUZ19 head computed in I4 symmetry

PDB DOI: https://doi.org/10.2210/pdb9S9B/pdb
EM Map EMD-54676: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Pseudomonas phage LUZ19
Mutation(s): No

Deposited: 2025-08-06 Released: 2026-07-15
Deposition Author(s): Stefanik Sobotkova, A., Cienikova, Z., Mironova, Y., Fuzik, T., Plevka, P., Novacek, J., Hlavenkova, Z.
Funding Organization(s): Ministry of Education, Youth and Sports of the Czech Republic, European Research Council (ERC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9S9B

This is version 1.0 of the entry. See complete history.

Literature

Structure of bacteriophage LUZ19 native particle

Stefanik Sobotkova, A., Cienikova, Z., Mironova, Y., Fuzik, T., Plevka, P., Novacek, J., Hlavenkova, Z.

To be published.

Macromolecule Content

Total Structure Weight: 320.26 kDa
Atom Count: 21,404
Modeled Residue Count: 2,716
Deposited Residue Count: 2,877
Unique protein chains: 3

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A B C D E A, B, C, D, E, F, G [auth b]	335	Pseudomonas phage LUZ19	Mutation(s): 0
UniProt
Find proteins for A9J7B7 (Pseudomonas phage LUZ19) Explore A9J7B7 Go to UniProtKB: A9J7B7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A9J7B7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Particle protein	H [auth c], I [auth e], J [auth h], K [auth j]	81	Pseudomonas phage LUZ19	Mutation(s): 0
UniProt
Find proteins for A0A6C0R2K8 (Pseudomonas phage vB_PaeP_PE3) Explore A0A6C0R2K8 Go to UniProtKB: A0A6C0R2K8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A6C0R2K8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Minor structural protein	L [auth m], M [auth o]	104	Pseudomonas phage LUZ19	Mutation(s): 0
UniProt
Find proteins for A0AAE9YJJ1 (Pseudomonas phage vB_PaeP_P1G) Explore A0AAE9YJJ1 Go to UniProtKB: A0AAE9YJJ1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0AAE9YJJ1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-07-15

Deposition Author(s):

Stefanik Sobotkova, A.

Funding Organization	Location	Grant Number
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	--
European Research Council (ERC)	European Union	--

Revision History (Full details and data files)

Version 1.0: 2026-07-15
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.