9S0N | pdb_00009s0n

Deposited: 2025-07-16 Released: 2026-02-04
Deposition Author(s): Rouse, S.L., Bubeck, D., Barritt, J.D., Xu, V., Wake, M.
Funding Organization(s): Other government, Other private

Experimental Data Snapshot

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein Rep40	B [auth a] C [auth b] D [auth c] E [auth d] F [auth e] B [auth a], C [auth b], D [auth c], E [auth d], F [auth e], G [auth f]	397	adeno-associated virus 2	Mutation(s): 0 Gene Names: Rep40 EC: 3.6.4.12
UniProt
Find proteins for Q89269 (Adeno-associated virus 2 (isolate Srivastava/1982)) Explore Q89269 Go to UniProtKB: Q89269
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q89269
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA	A [auth H]	145	adeno-associated virus 2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AGS (Subject of Investigation/LOI) Query on AGS Download Ideal Coordinates CCD File SDF format, chain H [auth a] SDF format, chain L [auth f] SDF format, chain J [auth b] MOL2 format, chain H [auth a] MOL2 format, chain L [auth f] MOL2 format, chain J [auth b] mmCIF format, chain H [auth a] mmCIF format, chain L [auth f] mmCIF format, chain J [auth b]	H [auth a], J [auth b], L [auth f]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C₁₀ H₁₆ N₅ O₁₂ P₃ S NLTUCYMLOPLUHL-KQYNXXCUSA-N		Interactions Focus chain H [auth a] Focus chain J [auth b] Focus chain L [auth f] Interactions & Density Focus chain H [auth a] Focus chain J [auth b] Focus chain L [auth f]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain M [auth f] SDF format, chain K [auth b] SDF format, chain I [auth a] MOL2 format, chain M [auth f] MOL2 format, chain K [auth b] MOL2 format, chain I [auth a] mmCIF format, chain M [auth f] mmCIF format, chain K [auth b] mmCIF format, chain I [auth a]	I [auth a], K [auth b], M [auth f]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain I [auth a] Focus chain K [auth b] Focus chain M [auth f] Interactions & Density Focus chain I [auth a] Focus chain K [auth b] Focus chain M [auth f]