9RVB | pdb_00009rvb

In situ 3D ED/MicroED microvolume structure of Magnaporthe grisea Woronin Body Major protein crystallized in cellulo

PDB DOI: https://doi.org/10.2210/pdb9RVB/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Pyricularia grisea
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2025-07-07 Released: 2026-07-22
Deposition Author(s): Polovinkin, V., Redecke, L.
Funding Organization(s): German Federal Ministry for Education and Research, European Regional Development Fund, Ministry of Education, Youth and Sports of the Czech Republic

Experimental Data Snapshot

Method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.90 Å
R-Value Free:
0.229 (Depositor), 0.250 (DCC)
R-Value Work:
0.205 (Depositor), 0.235 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

In situ 3D ED/MicroED microvolume structure of Magnaporthe grisea Woronin Body Major protein crystallized in cellulo

Polovinkin, V., Redecke, L.

To be published.

Macromolecule Content

Total Structure Weight: 20.01 kDa
Atom Count: 1,190
Modeled Residue Count: 143
Deposited Residue Count: 181
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative vacuolar ATPase MVP1	A	181	Pyricularia grisea	Mutation(s): 0 Gene Names: VATP
UniProt
Find proteins for Q9UW16 (Pyricularia grisea) Explore Q9UW16 Go to UniProtKB: Q9UW16
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UW16
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.90 Å
R-Value Free: 0.229 (Depositor), 0.250 (DCC)
R-Value Work: 0.205 (Depositor), 0.235 (DCC)

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.83	α = 90
b = 57.83	β = 90
c = 198.177	γ = 120

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	REFMAC
RECONSTRUCTION	Coot
RECONSTRUCTION	REFMAC

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-07-22

Deposition Author(s):

Funding Organization	Location	Grant Number
German Federal Ministry for Education and Research	Germany	05K18FLA
European Regional Development Fund	European Union	CZ.02.1.01/0.0/0.0/15_003/0000447
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	LM2023042

Revision History (Full details and data files)

Version 1.0: 2026-07-22
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.