9ROW | pdb_00009row

Asymmetric unit of bacteriophage 812 prohead II without minor capsid proteins

PDB DOI: https://doi.org/10.2210/pdb9ROW/pdb
EM Map EMD-54132: EMDB EMDataResource

Classification: VIRUS
Organism(s): Staphylococcus phage 812K1/420
Mutation(s): No

Deposited: 2025-06-23 Released: 2026-06-24
Deposition Author(s): Zlatohurska, M., Prochazkova, M., Cienikova, Z., Fuzik, T., Plevka, P.
Funding Organization(s): European Research Council (ERC), Ministry of Education, Youth and Sports of the Czech Republic

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9ROW

This is version 1.0 of the entry. See complete history.

Literature

Cryo-ET of S. aureus infection by Herelleviridae phage 812

Zlatohurska, M., Prochazkova, M., Cienikova, Z., Fuzik, T., Bardy, P., Plevka, P.

To be published.

Macromolecule Content

Total Structure Weight: 775.14 kDa
Atom Count: 54,360
Modeled Residue Count: 7,004
Deposited Residue Count: 7,024
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A [auth B] B [auth D] C [auth F] D [auth G] E [auth H] A [auth B], B [auth D], C [auth F], D [auth G], E [auth H], F [auth I], G [auth J], H [auth L], I [auth M], J [auth N], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth W]	439	Staphylococcus phage 812K1/420	Mutation(s): 0
UniProt
Find proteins for A1YTN4 (Staphylococcus phage 812) Explore A1YTN4 Go to UniProtKB: A1YTN4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1YTN4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	5.0beta

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-06-24

Deposition Author(s):

Zlatohurska, M.

Prochazkova, M.

Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	101043452
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	LX22NPO5103
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	CZ.02.01.01/00/22_008/0004607
European Research Council (ERC)	European Union	1233487

Revision History (Full details and data files)

Version 1.0: 2026-06-24
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.