9RKX | pdb_00009rkx

Atomic model of Cx43 gap junction channel rigid-body fitted to the in situ structure of the human Cx43 gap junction


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 14.0 Å
  • Aggregation State: TISSUE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

In situ structure of the human gap junction.

Eshriew, E.Kumpula, E.P.Sah-Teli, S.K.Abettan, A.Djurabekova, A.Sharma, V.Huiskonen, J.T.

(2026) Sci Adv 12: eaea4183-eaea4183

  • DOI: https://doi.org/10.1126/sciadv.aea4183
  • Primary Citation Related Structures: 
    9RKX

  • PubMed Abstract: 

    Gap junction plaques (GJPs) enable direct intercellular communication and consist of connexin channels arranged into two-dimensional lattices. While structures of purified connexin channels have informed models of gating, they omit key intracellular regions and lack native context. Here, we use cryo-electron tomography and focused ion beam milling to determine the in situ structure of human connexin 43 (Cx43) GJPs in HEK293 cells at 14-Å resolution. We reveal a previously unresolved structural contribution of the large carboxyl-terminal domain to lateral channel-channel interactions that appear critical for plaque assembly. Coarse-grained molecular dynamics simulations suggest how lipids and cholesterol occupy the space between adjacent connexins. These findings resolve a decades-old question regarding gap junction organization and highlight a mechanistic function for the carboxyl-terminal domain, likely regulated by a helix-loop-helix motif. Our study provides a structural blueprint for understanding how connexin diversity and regulation shape tissue-level communication in health and disease.


  • Organizational Affiliation
    • Institute of Biotechnology, Helsinki Institute of Life Science HiLIFE, University of Helsinki, 00014 Helsinki, Finland.

Macromolecule Content 

  • Total Structure Weight: 516.74 kDa 
  • Atom Count: 18,492 
  • Modeled Residue Count: 2,268 
  • Deposited Residue Count: 4,584 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Gap junction alpha-1 protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
382Homo sapiensMutation(s): 0 
Gene Names: GJA1GJAL
UniProt & NIH Common Fund Data Resources
Find proteins for P17302 (Homo sapiens)
Explore P17302 
Go to UniProtKB:  P17302
PHAROS:  P17302
GTEx:  ENSG00000152661 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17302
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 14.0 Å
  • Aggregation State: TISSUE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sigrid Juselius FoundationFinland--

Revision History  (Full details and data files)

  • Version 1.0: 2026-04-15
    Type: Initial release
  • Version 1.1: 2026-05-27
    Changes: Data collection, Database references