9R6B | pdb_00009r6b

CPS secretion pathway Wza-Wzc (Conf 4)

PDB DOI: https://doi.org/10.2210/pdb9R6B/pdb
EM Map EMD-53609: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli B
Mutation(s): Yes

Deposited: 2025-05-11 Released: 2026-03-04
Deposition Author(s): Yuan, B., Heinz, D.W.
Funding Organization(s): Helmholtz Association

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

CPS secretion pathway Wza-Wzc (Conf 4)

Yuan, B., Heinz, D.W.

To be published.

Macromolecule Content

Total Structure Weight: 1,006.86 kDa
Atom Count: 62,052
Modeled Residue Count: 7,968
Deposited Residue Count: 9,056
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative polysaccharide export protein Wza	A, B, C, D, E A, B, C, D, E, F, G, H	394	Escherichia coli K-12	Mutation(s): 0 Gene Names: wza, b2062, JW2047
UniProt
Find proteins for P0A930 (Escherichia coli (strain K12)) Explore P0A930 Go to UniProtKB: P0A930
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A930
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein kinase wzc	I, J, K, L, M I, J, K, L, M, N, O, P	738	Escherichia coli K-12	Mutation(s): 1 Gene Names: wzc, b2060, JW2045 EC: 2.7.10
UniProt
Find proteins for P76387 (Escherichia coli (strain K12)) Explore P76387 Go to UniProtKB: P76387
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P76387
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download Ideal Coordinates CCD File SDF format, chain Q [auth I] SDF format, chain R [auth J] SDF format, chain V [auth N] SDF format, chain X [auth P] SDF format, chain W [auth O] SDF format, chain U [auth M] SDF format, chain T [auth L] SDF format, chain S [auth K] MOL2 format, chain Q [auth I] MOL2 format, chain R [auth J] MOL2 format, chain V [auth N] MOL2 format, chain X [auth P] MOL2 format, chain W [auth O] MOL2 format, chain U [auth M] MOL2 format, chain T [auth L] MOL2 format, chain S [auth K] mmCIF format, chain Q [auth I] mmCIF format, chain R [auth J] mmCIF format, chain V [auth N] mmCIF format, chain X [auth P] mmCIF format, chain W [auth O] mmCIF format, chain U [auth M] mmCIF format, chain T [auth L] mmCIF format, chain S [auth K]	Q [auth I] R [auth J] S [auth K] T [auth L] U [auth M] Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain Q [auth I] Focus chain R [auth J] Focus chain S [auth K] Focus chain T [auth L] Focus chain U [auth M] Focus chain V [auth N] Focus chain W [auth O] Focus chain X [auth P] Interactions & Density Focus chain Q [auth I] Focus chain R [auth J] Focus chain S [auth K] Focus chain T [auth L] Focus chain U [auth M] Focus chain V [auth N] Focus chain W [auth O] Focus chain X [auth P]