9R63 | pdb_00009r63

CPS co-polymerase Wzc_C4

PDB DOI: https://doi.org/10.2210/pdb9R63/pdb
EM Map EMD-53601: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli B
Mutation(s): Yes

Deposited: 2025-05-11 Released: 2026-03-04
Deposition Author(s): Yuan, B., Heinz, D.W.
Funding Organization(s): Helmholtz Association

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9R63

This is version 1.0 of the entry. See complete history.

Literature

Capsular polysaccharide co-polymerase Wzc_C4

Yuan, B., Heinz, D.W.

To be published.

Macromolecule Content

Total Structure Weight: 656.07 kDa
Atom Count: 40,304
Modeled Residue Count: 5,168
Deposited Residue Count: 5,904
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein kinase wzc	A [auth I] B [auth J] C [auth K] D [auth L] E [auth M] A [auth I], B [auth J], C [auth K], D [auth L], E [auth M], F [auth N], G [auth O], H [auth P]	738	Escherichia coli K-12	Mutation(s): 1 Gene Names: wzc, b2060, JW2045 EC: 2.7.10
UniProt
Find proteins for P76387 (Escherichia coli (strain K12)) Explore P76387 Go to UniProtKB: P76387
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P76387
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download:Ideal Coordinates CCD File SDF format, chain O [auth L] SDF format, chain W [auth P] SDF format, chain U [auth O] SDF format, chain S [auth N] SDF format, chain Q [auth M] SDF format, chain M [auth K] SDF format, chain K [auth J] SDF format, chain I MOL2 format, chain O [auth L] MOL2 format, chain W [auth P] MOL2 format, chain U [auth O] MOL2 format, chain S [auth N] MOL2 format, chain Q [auth M] MOL2 format, chain M [auth K] MOL2 format, chain K [auth J] MOL2 format, chain I mmCIF format, chain O [auth L] mmCIF format, chain W [auth P] mmCIF format, chain U [auth O] mmCIF format, chain S [auth N] mmCIF format, chain Q [auth M] mmCIF format, chain M [auth K] mmCIF format, chain K [auth J] mmCIF format, chain I	I K [auth J] M [auth K] O [auth L] Q [auth M] I, K [auth J], M [auth K], O [auth L], Q [auth M], S [auth N], U [auth O], W [auth P]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain I Focus chain K [auth J] Focus chain M [auth K] Focus chain O [auth L] Focus chain Q [auth M] Focus chain S [auth N] Focus chain U [auth O] Focus chain W [auth P] Interactions & Density Focus chain I Focus chain K [auth J] Focus chain M [auth K] Focus chain O [auth L] Focus chain Q [auth M] Focus chain S [auth N] Focus chain U [auth O] Focus chain W [auth P]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain T [auth N] SDF format, chain X [auth P] SDF format, chain V [auth O] SDF format, chain R [auth M] SDF format, chain P [auth L] SDF format, chain N [auth K] SDF format, chain L [auth J] SDF format, chain J [auth I] MOL2 format, chain T [auth N] MOL2 format, chain X [auth P] MOL2 format, chain V [auth O] MOL2 format, chain R [auth M] MOL2 format, chain P [auth L] MOL2 format, chain N [auth K] MOL2 format, chain L [auth J] MOL2 format, chain J [auth I] mmCIF format, chain T [auth N] mmCIF format, chain X [auth P] mmCIF format, chain V [auth O] mmCIF format, chain R [auth M] mmCIF format, chain P [auth L] mmCIF format, chain N [auth K] mmCIF format, chain L [auth J] mmCIF format, chain J [auth I]	J [auth I] L [auth J] N [auth K] P [auth L] R [auth M] J [auth I], L [auth J], N [auth K], P [auth L], R [auth M], T [auth N], V [auth O], X [auth P]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain J [auth I] Focus chain L [auth J] Focus chain N [auth K] Focus chain P [auth L] Focus chain R [auth M] Focus chain T [auth N] Focus chain V [auth O] Focus chain X [auth P] Interactions & Density Focus chain J [auth I] Focus chain L [auth J] Focus chain N [auth K] Focus chain P [auth L] Focus chain R [auth M] Focus chain T [auth N] Focus chain V [auth O] Focus chain X [auth P]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-03-04

Deposition Author(s):

Funding Organization	Location	Grant Number
Helmholtz Association	Germany	--

Revision History (Full details and data files)

Version 1.0: 2026-03-04
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.