9R62 | pdb_00009r62

CPS co-polymerase Wzc_C1

PDB DOI: https://doi.org/10.2210/pdb9R62/pdb
EM Map EMD-53600: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli B
Mutation(s): Yes

Deposited: 2025-05-11 Released: 2026-03-04
Deposition Author(s): Yuan, B., Heinz, D.W.
Funding Organization(s): Helmholtz Association

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

CPS co-polymerase Wzc_C1

Yuan, B., Heinz, D.W.

To be published.

Macromolecule Content

Total Structure Weight: 656.07 kDa
Atom Count: 40,304
Modeled Residue Count: 5,168
Deposited Residue Count: 5,904
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein kinase wzc	A [auth I] B [auth J] C [auth K] D [auth L] E [auth M] A [auth I], B [auth J], C [auth K], D [auth L], E [auth M], F [auth N], G [auth O], H [auth P]	738	Escherichia coli K-12	Mutation(s): 1 Gene Names: wzc, b2060, JW2045 EC: 2.7.10
UniProt
Find proteins for P76387 (Escherichia coli (strain K12)) Explore P76387 Go to UniProtKB: P76387
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P76387
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download Ideal Coordinates CCD File SDF format, chain I SDF format, chain K [auth J] SDF format, chain M [auth K] SDF format, chain Q [auth M] SDF format, chain S [auth N] SDF format, chain U [auth O] SDF format, chain W [auth P] SDF format, chain O [auth L] MOL2 format, chain I MOL2 format, chain K [auth J] MOL2 format, chain M [auth K] MOL2 format, chain Q [auth M] MOL2 format, chain S [auth N] MOL2 format, chain U [auth O] MOL2 format, chain W [auth P] MOL2 format, chain O [auth L] mmCIF format, chain I mmCIF format, chain K [auth J] mmCIF format, chain M [auth K] mmCIF format, chain Q [auth M] mmCIF format, chain S [auth N] mmCIF format, chain U [auth O] mmCIF format, chain W [auth P] mmCIF format, chain O [auth L]	I K [auth J] M [auth K] O [auth L] Q [auth M] I, K [auth J], M [auth K], O [auth L], Q [auth M], S [auth N], U [auth O], W [auth P]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain I Focus chain K [auth J] Focus chain M [auth K] Focus chain O [auth L] Focus chain Q [auth M] Focus chain S [auth N] Focus chain U [auth O] Focus chain W [auth P] Interactions & Density Focus chain I Focus chain K [auth J] Focus chain M [auth K] Focus chain O [auth L] Focus chain Q [auth M] Focus chain S [auth N] Focus chain U [auth O] Focus chain W [auth P]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain J [auth I] SDF format, chain N [auth K] SDF format, chain P [auth L] SDF format, chain R [auth M] SDF format, chain T [auth N] SDF format, chain V [auth O] SDF format, chain X [auth P] SDF format, chain L [auth J] MOL2 format, chain J [auth I] MOL2 format, chain N [auth K] MOL2 format, chain P [auth L] MOL2 format, chain R [auth M] MOL2 format, chain T [auth N] MOL2 format, chain V [auth O] MOL2 format, chain X [auth P] MOL2 format, chain L [auth J] mmCIF format, chain J [auth I] mmCIF format, chain N [auth K] mmCIF format, chain P [auth L] mmCIF format, chain R [auth M] mmCIF format, chain T [auth N] mmCIF format, chain V [auth O] mmCIF format, chain X [auth P] mmCIF format, chain L [auth J]	J [auth I] L [auth J] N [auth K] P [auth L] R [auth M] J [auth I], L [auth J], N [auth K], P [auth L], R [auth M], T [auth N], V [auth O], X [auth P]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain J [auth I] Focus chain L [auth J] Focus chain N [auth K] Focus chain P [auth L] Focus chain R [auth M] Focus chain T [auth N] Focus chain V [auth O] Focus chain X [auth P] Interactions & Density Focus chain J [auth I] Focus chain L [auth J] Focus chain N [auth K] Focus chain P [auth L] Focus chain R [auth M] Focus chain T [auth N] Focus chain V [auth O] Focus chain X [auth P]