9QUQ | pdb_00009quq

cryo-EM structure of TolQR conformation2 in SMA nanodiscs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Deciphering the molecular mechanism of the bacterial division motor TolQRA.

Shen, C.Xie, T.Luo, Y.Zhao, F.Wang, X.Zhang, Z.Pang, J.Zhang, J.Dong, X.Chang, S.Ding, B.S.Ying, B.Chi, W.Su, Z.Zhou, R.Tang, X.Dong, H.

(2025) Cell Discov 11: 87-87

  • DOI: https://doi.org/10.1038/s41421-025-00841-w
  • Primary Citation of Related Structures:  
    9O40, 9QUQ, 9QVD

  • PubMed Abstract: 

    The Tol-Pal system is essential for maintaining outer membrane (OM) stability during cell division in Gram-negative bacteria. The inner membrane complex TolQRA harnesses proton motive force (PMF) to establish transient interactions within the periplasm, thereby coordinating cell envelope remodeling and facilitating OM invagination at division sites. However, the precise mechanism remains unclear. Here, we present cryo-electron microscopy structures of Escherichia coli TolQRA in multiple conformational states at 2.92-3.52 Å resolution, revealing rotary dynamics within the complex. Computational simulations reveal a proton-conductive channel comprising the putative proton-accepting residue Asp23 and the conserved polar residues Thr145 and Thr178, with monitored inter-residue distances providing support for a proton-driven rotary mechanism. Site-directed mutagenesis combined with functional assays validates the AlphaFold-predicted structure of the periplasmic domains of TolR and TolA, and further pinpoints critical residues required for complex function. Together, these findings advance our understanding of TolQRA-mediated proton transduction and offer new avenues for antibiotic drug development.


  • Organizational Affiliation
    • Department of Laboratory Medicine, State Key Laboratory of Biotherapy, National Clinical Research Center for Geriatrics, West China Hospital, Sichuan University, Chengdu, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tol-Pal system protein TolAA [auth H]421Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: tolAcimexcClkyb0739JW0729
UniProt
Find proteins for P19934 (Escherichia coli (strain K12))
Explore P19934 
Go to UniProtKB:  P19934
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19934
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tol-Pal system protein TolQB [auth A],
C [auth B],
D [auth C],
E [auth D],
F [auth E]
230Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: tolQfiib0737JW0727
UniProt
Find proteins for P0ABU9 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0ABU9
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UniProt GroupP0ABU9
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Tol-Pal system protein TolRG [auth F],
H [auth G]
142Escherichia coli str. K-12 substr. MG1655Mutation(s): 0 
Gene Names: tolRb0738JW0728
UniProt
Find proteins for P0ABV6 (Escherichia coli (strain K12))
Explore P0ABV6 
Go to UniProtKB:  P0ABV6
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UniProt GroupP0ABV6
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32170029

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-17
    Type: Initial release