9QAJ | pdb_00009qaj

Structure of the nucleosome-bound human BCL7A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structure of the nucleosome-bound human BCL7A.

Martin, F.Kazrani, A.A.Lafouge, J.Diaz-Jimenez, D.M.Siebert, S.Fabbro-Burtschell, L.Maillard, E.Lapouge, K.Mertens, H.D.T.Sauter, C.Leitner, A.Ochsenbein, F.Blais, A.Bergamin, E.

(2025) Nucleic Acids Res 53

  • DOI: https://doi.org/10.1093/nar/gkaf273
  • Primary Citation of Related Structures:  
    9QAJ

  • PubMed Abstract: 

    Proteins of the BCL7 family (BCL7A, BCL7B, and BCL7C) are among the most recently identified subunits of the mammalian SWI/SNF chromatin remodeler complex and are absent from the unicellular version of this complex. Their function in the complex is unknown, and very limited structural information is available, despite the fact that they are mutated in several cancer types, most notably blood malignancies and hence medically relevant. Here, using cryo-electron microscopy in combination with biophysical and biochemical approaches, we show that BCL7A forms a stable, high-affinity complex with the nucleosome core particle (NCP) through binding of BCL7A with the acidic patch of the nucleosome via an arginine anchor motif. This interaction is impaired by BCL7A mutations found in cancer. Further, we determined that BCL7A contributes to the remodeling activity of the mSWI/SNF complex and we examined its function at the genomic level. Our findings reveal how BCL7 proteins interact with the NCP and help rationalize the impact of cancer-associated mutations. By providing structural information on the positioning of BCL7 on the NCP, our results broaden the understanding of the mechanism by which SWI/SNF recognizes the chromatin fiber.


  • Organizational Affiliation
    • Department of Functional Genomics and Cancer & Department of Integrated Structural Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), 67400 Illkirch-Graffenstaden, France.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H3.2
A, E
135Xenopus laevisMutation(s): 0 
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Find proteins for P84233 (Xenopus laevis)
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UniProt GroupP84233
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H4
B, F
102Xenopus laevisMutation(s): 0 
UniProt
Find proteins for P62799 (Xenopus laevis)
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UniProt GroupP62799
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2A
C, G
119Xenopus laevisMutation(s): 0 
Gene Names: LOC494591h2ac14.Lhist1h2ajhist1h2aj.L
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2B 1.1
D, H
125Xenopus laevisMutation(s): 0 
UniProt
Find proteins for P02281 (Xenopus laevis)
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  • Reference Sequence

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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of B-cell CLL/lymphoma 7 protein family member A
K, M
14Homo sapiensMutation(s): 0 
Gene Names: BCL7A
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PHAROS:  Q4VC05
GTEx:  ENSG00000110987 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of B-cell CLL/lymphoma 7 protein family member A
L, N
16Homo sapiensMutation(s): 0 
Gene Names: BCL7A
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Find proteins for Q4VC05 (Homo sapiens)
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PHAROS:  Q4VC05
GTEx:  ENSG00000110987 
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Entity ID: 5
MoleculeChains LengthOrganismImage
601 DNA145Homo sapiens
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Entity ID: 6
MoleculeChains LengthOrganismImage
601 DNA145Homo sapiens
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
ATIP-AvenirFrance--
Fondation pour la Recherche Medicale (FRM)France--
Fondation ARCFrance--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-23
    Type: Initial release