9PUD | pdb_00009pud

Deposited: 2025-07-30 Released: 2026-05-27
Deposition Author(s): Zhang, H., Wacker, D., Zilberg, G., Warren, A.L., Parpounas, A.K., Abraham, A.
Funding Organization(s): National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(i) subunit alpha-1	A, F [auth C]	354	Homo sapiens	Mutation(s): 4 Gene Names: GNAI1 EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens) Explore P63096 Go to UniProtKB: P63096
PHAROS: P63096 GTEx: ENSG00000127955
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P63096
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	B, G [auth D]	342	Homo sapiens	Mutation(s): 0 Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens) Explore P62873 Go to UniProtKB: P62873
PHAROS: P62873 GTEx: ENSG00000078369
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62873
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Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	C [auth G], H [auth E]	80	Homo sapiens	Mutation(s): 0 Gene Names: GNG2
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens) Explore P59768 Go to UniProtKB: P59768
PHAROS: P59768 GTEx: ENSG00000186469
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P59768
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Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Mu-type opioid receptor	D [auth R], I [auth F]	388	Homo sapiens	Mutation(s): 1 Gene Names: OPRM1, MOR1
UniProt & NIH Common Fund Data Resources
Find proteins for P35372 (Homo sapiens) Explore P35372 Go to UniProtKB: P35372
PHAROS: P35372 GTEx: ENSG00000112038
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P35372
Sequence Annotations Expand
Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
DAMGO	E [auth S], J [auth H]	5	Homo sapiens	Mutation(s): 0

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CLR Query on CLR Download:Ideal Coordinates CCD File SDF format, chain K [auth R] SDF format, chain L [auth R] SDF format, chain M [auth F] SDF format, chain N [auth F] MOL2 format, chain K [auth R] MOL2 format, chain L [auth R] MOL2 format, chain M [auth F] MOL2 format, chain N [auth F] mmCIF format, chain K [auth R] mmCIF format, chain L [auth R] mmCIF format, chain M [auth F] mmCIF format, chain N [auth F]	K [auth R], L [auth R], M [auth F], N [auth F]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain K [auth R] Focus chain L [auth R] Focus chain M [auth F] Focus chain N [auth F] Interactions & Density Focus chain K [auth R] Focus chain L [auth R] Focus chain M [auth F] Focus chain N [auth F]

1 Unique

Entity ID: 5
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_002308 Query on PRD_002308	E [auth H], J [auth S]	DAMGO	Peptide-like / Synthetic opioid		Interactions Focus chain E [auth S] Focus chain J [auth H] Interactions & Density Focus chain E [auth S] Focus chain J [auth H]