9PTC | pdb_00009ptc

Alpha-synuclein acetylated lysine 80 A

PDB DOI: https://doi.org/10.2210/pdb9PTC/pdb
EM Map EMD-71839: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-07-28 Released: 2026-08-05
Deposition Author(s): Li, M.H.
Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 9PTC

This is version 1.0 of the entry. See complete history.

Literature

Investigation of All Disease-Relevant Lysine Acetylation Sites in alpha-Synuclein Enabled by Non-canonical Amino Acid Mutagenesis

Shimogawa, M., Li, M.H., Park, G.S.H., Ramirez, J., Lee, H., Watson, P.R., Sharma, S., Lin, Z., Peng, C., Garcia, B., Christianson, D., Rhoades, E., Eliezer, D., Petersson, J.

To be published.

Macromolecule Content

Total Structure Weight: 145.17 kDa
Atom Count: 4,530
Modeled Residue Count: 650
Deposited Residue Count: 1,400
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A [auth H] B [auth C] C [auth G] D [auth B] E [auth F] A [auth H], B [auth C], C [auth G], D [auth B], E [auth F], F [auth A], G [auth J], H [auth E], I, J [auth D]	140	Homo sapiens	Mutation(s): 0 Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840 Go to UniProtKB: P37840
PHAROS: P37840 GTEx: ENSG00000145335
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P37840
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ALY Query on ALY	A [auth H] B [auth C] C [auth G] D [auth B] E [auth F] A [auth H], B [auth C], C [auth G], D [auth B], E [auth F], F [auth A], G [auth J], H [auth E], I, J [auth D]	L-PEPTIDE LINKING	C₈ H₁₆ N₂ O₃		LYS

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.2_5419

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-08-05

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	RF1 NS125770
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35 GM136686

Revision History (Full details and data files)

Version 1.0: 2026-08-05
Type: Initial release