9PDV | pdb_00009pdv

YG18 peptide - C5 thick tube

PDB DOI: https://doi.org/10.2210/pdb9PDV/pdb
EM Map EMD-71545: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): synthetic construct
Mutation(s): No

Deposited: 2025-07-01 Released: 2026-07-08
Deposition Author(s): Sonani, R.R., Distaffen, H.E., Nilsson, B.L., Egelman, E.H.
Funding Organization(s): National Science Foundation (NSF, United States), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

YG18 peptide - C5 thick tube

Sonani, R.R., Egelman, E.H.

To be published.

Macromolecule Content

Total Structure Weight: 107.53 kDa
Atom Count: 7,900
Modeled Residue Count: 1,000
Deposited Residue Count: 1,000
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YG18 peptide	A [auth T] AA [auth 1] AB [auth g] AC [auth Ai] B [auth n] A [auth T], AA [auth 1], AB [auth g], AC [auth Ai], B [auth n], BA [auth 3], BB [auth AM], BC [auth Ak], C [auth i], CA [auth a], CB [auth AL], CC [auth Al], D [auth p], DA [auth 5], DB [auth AN], DC [auth An], E [auth U], EA [auth 4], EB [auth h], EC [auth Am], F [auth o], FA [auth 6], FB [auth AP], FC [auth Ao], G [auth j], GA [auth b], GB [auth AO], GC [auth Ap], H [auth q], HA [auth 8], HB [auth AQ], HC [auth Ar], I [auth V], IA [auth 7], IB [auth AR], IC [auth Aq], J [auth r], JA [auth 9], JB [auth AT], JC [auth As], K [auth k], KA [auth c], KB [auth AS], KC [auth At], L [auth s], LA [auth AA], LB [auth AU], LC [auth Av], M [auth W], MA [auth 0], MB [auth AV], MC [auth Au], N [auth t], NA [auth AB], NB [auth AX], NC [auth Aw], O [auth l], OA [auth d], OB [auth AW], OC [auth Ax], P [auth u], PA [auth AD], PB [auth AY], PC [auth Az], Q [auth X], QA [auth AC], QB [auth AZ], QC [auth Ay], R [auth v], RA [auth AE], RB [auth Ab], RC [auth A1], S [auth m], SA [auth e], SB [auth Aa], SC [auth A2], T [auth w], TA [auth AG], TB [auth Ac], TC [auth A4], U [auth Y], UA [auth AF], UB [auth Ad], UC [auth A3], V [auth y], VA [auth AH], VB [auth Af], VC [auth A5], W [auth x], WA [auth f], WB [auth Ae], X [auth z], XA [auth AJ], XB [auth Ag], Y [auth Z], YA [auth AI], YB [auth Ah], Z [auth 2], ZA [auth AK], ZB [auth Aj]	10	synthetic construct	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-07-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	NSF 2304854
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM122510