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 9PBS | pdb_00009pbs

Core SWI/SNF of PIC-Med-SWI/SNF-Nucleosome

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

Structure of Core SWI/SNF of PIC-Med-SWI/SNF-Nucleosome

Yang, C., Nagai, S., Chen, D.-H.

To be published.

Macromolecule Content 

  • Total Structure Weight: 810.66 kDa 
  • Atom Count: 24,359 
  • Modeled Residue Count: 3,007 
  • Deposited Residue Count: 7,175 
  • Unique protein chains: 8

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription regulatory protein SNF12566Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P53628 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P53628
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UniProt GroupP53628
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
SWI/SNF complex subunit SWI3
B, D
825Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P32591 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP32591
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription regulatory protein SNF6332Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P18888 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP18888
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
SWI/SNF global transcription activator complex subunit SWP82623Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P43554 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP43554
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
SWI/SNF chromatin-remodeling complex subunit SNF5905Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P18480 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP18480
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Unknown82Saccharomyces cerevisiaeMutation(s): 0 
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription regulatory protein SNF21,703Saccharomyces cerevisiaeMutation(s): 0 
EC: 3.6.4
UniProt
Find proteins for P22082 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP22082
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
SWI/SNF chromatin-remodeling complex subunit SWI11,314Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P09547 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P09547 
Go to UniProtKB:  P09547
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UniProt GroupP09547
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
UNK
Query on UNK
G
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

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View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-07
    Type: Initial release