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 9PB8 | pdb_00009pb8

TBP/TFIIE/DNA of PIC-Med-SWI/SNF

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

Structure of TBP/TFIIE/DNA of PIC-Med-SWI/SNF

Yang, C., Nagai, S., Chen, D.-H.

To be published.

Macromolecule Content 

  • Total Structure Weight: 279.17 kDa 
  • Atom Count: 10,365 
  • Modeled Residue Count: 1,146 
  • Deposited Residue Count: 2,299 
  • Unique protein chains: 7
  • Unique nucleic acid chains: 2

Macromolecules


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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
TATA-box-binding proteinB [auth O]240Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SPT15, BTF1, TBP1, YER148W
UniProt
Find proteins for P13393 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P13393
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UniProt GroupP13393
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor IIE subunit betaD [auth X]328Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36145 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36145 
Go to UniProtKB:  P36145
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UniProt GroupP36145
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor IIE subunit alphaE [auth W]482Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36100 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36100 
Go to UniProtKB:  P36100
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UniProt GroupP36100
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor IIBF [auth M]345Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SUA7, YPR086W, P9513.4
UniProt
Find proteins for P29055 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P29055
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UniProt GroupP29055
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor IIF subunit betaG [auth R]400Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P41896 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P41896
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UniProt GroupP41896
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor IIA large subunitH [auth U]286Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: TOA1, YOR194C
UniProt
Find proteins for P32773 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP32773
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Reference Sequence
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor IIA subunit 2I [auth V]122Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: TOA2, YKL058W
UniProt
Find proteins for P32774 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P32774
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UniProt GroupP32774
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Reference Sequence
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Entity ID: 1
MoleculeChains LengthOrganismImage
promoter DNAA [auth N]48Saccharomyces cerevisiae
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Reference Sequence
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Entity ID: 3
MoleculeChains LengthOrganismImage
promoter DNAC [auth T]48Saccharomyces cerevisiae
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN

Query on ZN


Download:Ideal Coordinates CCD File
J [auth W]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

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View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-07
    Type: Initial release