9P7E | pdb_00009p7e

In situ human Hibernating class5 80S ribosome

• PDB DOI: https://doi.org/10.2210/pdb9P7E/pdb
• Entry: 9P7E supersedes: 9B0H
• EM Map EMD-71339: EMDB EMDataResource

• Classification: RIBOSOME
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2025-06-20 Released: 2025-12-24 
• Deposition Author(s): Wei, Z., Yong, X.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.59 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Visualizing the translation landscape in human cells at high resolution

Zheng, W., Zhang, Y., Wang, J., Wang, S., Chai, P., Bailey, E.J., Zhu, C., Guo, W., Devarkar, S.C., Wu, S., Lin, J., Zhang, K., Liu, J., Lomakin, I.B., Xiong, Y.

(2025) Nat Commun 16: 10757

• DOI: https://doi.org/10.1038/s41467-025-65795-9

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 81-mer - AA1AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1BZ1Ba1Bb1Bc1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 81-mer - AA2AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1BZ1Ba1Bb1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 3,887.59 kDa 
• Atom Count: 228,141 
• Modeled Residue Count: 18,832 
• Deposited Residue Count: 20,863 
• Unique protein chains: 81
• Unique nucleic acid chains: 5

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SERPINE1 mRNA-binding protein 1	A [auth CD]	408	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NC51 (Homo sapiens) Explore Q8NC51  Go to UniProtKB:  Q8NC51
PHAROS:  Q8NC51 GTEx:  ENSG00000142864

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor BTF3	B [auth CI]	206	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P20290 (Homo sapiens) Explore P20290  Go to UniProtKB:  P20290
PHAROS:  P20290 GTEx:  ENSG00000145741

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	F [auth LA]	248	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62917 (Homo sapiens) Explore P62917  Go to UniProtKB:  P62917
GTEx:  ENSG00000161016

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL3	G [auth LB]	402	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P39023 (Homo sapiens) Explore P39023  Go to UniProtKB:  P39023
PHAROS:  P39023 GTEx:  ENSG00000100316

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	H [auth LC]	368	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P36578 (Homo sapiens) Explore P36578  Go to UniProtKB:  P36578
PHAROS:  P36578 GTEx:  ENSG00000174444

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL18	I [auth LD]	293	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46777 (Homo sapiens) Explore P46777  Go to UniProtKB:  P46777
PHAROS:  P46777 GTEx:  ENSG00000122406

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL6	J [auth LE]	250	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02878 (Homo sapiens) Explore Q02878  Go to UniProtKB:  Q02878
PHAROS:  Q02878 GTEx:  ENSG00000089009

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	K [auth LF]	225	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18124 (Homo sapiens) Explore P18124  Go to UniProtKB:  P18124
PHAROS:  P18124 GTEx:  ENSG00000147604

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	L [auth LG]	241	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62424 (Homo sapiens) Explore P62424  Go to UniProtKB:  P62424
PHAROS:  P62424 GTEx:  ENSG00000148303

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	M [auth LH]	190	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P32969 (Homo sapiens) Explore P32969  Go to UniProtKB:  P32969
PHAROS:  P32969 GTEx:  ENSG00000163682

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL16-like	N [auth LI]	213	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L21 (Homo sapiens) Explore Q96L21  Go to UniProtKB:  Q96L21
PHAROS:  Q96L21 GTEx:  ENSG00000165496

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	O [auth LJ]	176	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62913 (Homo sapiens) Explore P62913  Go to UniProtKB:  P62913
PHAROS:  P62913 GTEx:  ENSG00000142676

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL13	P [auth LL]	210	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P26373 (Homo sapiens) Explore P26373  Go to UniProtKB:  P26373
PHAROS:  P26373 GTEx:  ENSG00000167526

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	Q [auth LM]	139	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P50914 (Homo sapiens) Explore P50914  Go to UniProtKB:  P50914
PHAROS:  P50914 GTEx:  ENSG00000188846

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	R [auth LN]	203	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61313 (Homo sapiens) Explore P61313  Go to UniProtKB:  P61313
PHAROS:  P61313 GTEx:  ENSG00000174748

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13a	S [auth LO]	201	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P40429 (Homo sapiens) Explore P40429  Go to UniProtKB:  P40429
PHAROS:  P40429 GTEx:  ENSG00000142541

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	T [auth LP]	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18621 (Homo sapiens) Explore P18621  Go to UniProtKB:  P18621
PHAROS:  P18621 GTEx:  ENSG00000265681

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	U [auth LQ]	187	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q07020 (Homo sapiens) Explore Q07020  Go to UniProtKB:  Q07020
PHAROS:  Q07020 GTEx:  ENSG00000063177

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	V [auth LR]	187	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P84098 (Homo sapiens) Explore P84098  Go to UniProtKB:  P84098
PHAROS:  P84098 GTEx:  ENSG00000108298

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	W [auth LS]	175	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02543 (Homo sapiens) Explore Q02543  Go to UniProtKB:  Q02543
GTEx:  ENSG00000105640

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21	X [auth LT]	159	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46778 (Homo sapiens) Explore P46778  Go to UniProtKB:  P46778
PHAROS:  P46778 GTEx:  ENSG00000122026

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Heparin-binding protein HBp15	Y [auth LU]	101	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for Q7Z4W8 (Homo sapiens) Explore Q7Z4W8  Go to UniProtKB:  Q7Z4W8

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23	Z [auth LV]	131	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62829 (Homo sapiens) Explore P62829  Go to UniProtKB:  P62829
PHAROS:  P62829 GTEx:  ENSG00000125691

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L24	AA [auth LW]	124	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for A0A994J4A5 (Homo sapiens) Explore A0A994J4A5  Go to UniProtKB:  A0A994J4A5
GTEx:  ENSG00000114391

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	BA [auth LX]	120	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62750 (Homo sapiens) Explore P62750  Go to UniProtKB:  P62750
PHAROS:  P62750 GTEx:  ENSG00000198242

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	CA [auth LY]	134	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61254 (Homo sapiens) Explore P61254  Go to UniProtKB:  P61254
PHAROS:  P61254 GTEx:  ENSG00000161970

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	DA [auth LZ]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61353 (Homo sapiens) Explore P61353  Go to UniProtKB:  P61353
PHAROS:  P61353 GTEx:  ENSG00000131469

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27a	EA [auth La]	147	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46776 (Homo sapiens) Explore P46776  Go to UniProtKB:  P46776
PHAROS:  P46776 GTEx:  ENSG00000166441

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL29	FA [auth Lb]	121	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P47914 (Homo sapiens) Explore P47914  Go to UniProtKB:  P47914
GTEx:  ENSG00000162244

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	GA [auth Lc]	98	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62888 (Homo sapiens) Explore P62888  Go to UniProtKB:  P62888
PHAROS:  P62888 GTEx:  ENSG00000156482

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	HA [auth Ld]	107	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62899 (Homo sapiens) Explore P62899  Go to UniProtKB:  P62899
PHAROS:  P62899 GTEx:  ENSG00000071082

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	IA [auth Le]	128	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62910 (Homo sapiens) Explore P62910  Go to UniProtKB:  P62910
PHAROS:  P62910 GTEx:  ENSG00000144713

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	JA [auth Lf]	109	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18077 (Homo sapiens) Explore P18077  Go to UniProtKB:  P18077
PHAROS:  P18077 GTEx:  ENSG00000182899

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34	KA [auth Lg]	114	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P49207 (Homo sapiens) Explore P49207  Go to UniProtKB:  P49207
PHAROS:  P49207 GTEx:  ENSG00000109475

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35	LA [auth Lh]	122	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42766 (Homo sapiens) Explore P42766  Go to UniProtKB:  P42766
PHAROS:  P42766 GTEx:  ENSG00000136942

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	MA [auth Li]	102	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3U8 (Homo sapiens) Explore Q9Y3U8  Go to UniProtKB:  Q9Y3U8
PHAROS:  Q9Y3U8 GTEx:  ENSG00000130255

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	NA [auth Lj]	86	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61927 (Homo sapiens) Explore P61927  Go to UniProtKB:  P61927
PHAROS:  P61927 GTEx:  ENSG00000145592

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	OA [auth Lk]	69	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63173 (Homo sapiens) Explore P63173  Go to UniProtKB:  P63173
PHAROS:  P63173 GTEx:  ENSG00000172809

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	PA [auth Ll]	50	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62891 (Homo sapiens) Explore P62891  Go to UniProtKB:  P62891
GTEx:  ENSG00000198918

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL40	QA [auth Lm]	52	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62987 (Homo sapiens) Explore P62987  Go to UniProtKB:  P62987
PHAROS:  P62987 GTEx:  ENSG00000221983

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41	RA [auth Ln]	24	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62945 (Homo sapiens) Explore P62945  Go to UniProtKB:  P62945
PHAROS:  P62945 GTEx:  ENSG00000229117

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36a	SA [auth Lo]	105	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P83881 (Homo sapiens) Explore P83881  Go to UniProtKB:  P83881
PHAROS:  P83881 GTEx:  ENSG00000241343

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	TA [auth Lp]	91	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61513 (Homo sapiens) Explore P61513  Go to UniProtKB:  P61513
PHAROS:  P61513 GTEx:  ENSG00000197756

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	UA [auth Lr]	125	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46779 (Homo sapiens) Explore P46779  Go to UniProtKB:  P46779
PHAROS:  P46779 GTEx:  ENSG00000108107

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein P0	VA [auth Ls]	196	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P05388 (Homo sapiens) Explore P05388  Go to UniProtKB:  P05388
PHAROS:  P05388 GTEx:  ENSG00000089157

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL11	WA [auth Lt]	157	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P30050 (Homo sapiens) Explore P30050  Go to UniProtKB:  P30050
PHAROS:  P30050 GTEx:  ENSG00000197958

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein SA	XA [auth SA]	221	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P08865 (Homo sapiens) Explore P08865  Go to UniProtKB:  P08865
PHAROS:  P08865 GTEx:  ENSG00000168028

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3a	YA [auth SB]	214	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61247 (Homo sapiens) Explore P61247  Go to UniProtKB:  P61247
GTEx:  ENSG00000145425

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	ZA [auth SC]	222	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P15880 (Homo sapiens) Explore P15880  Go to UniProtKB:  P15880
PHAROS:  P15880 GTEx:  ENSG00000140988

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS4, X isoform	AB [auth SE]	262	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62701 (Homo sapiens) Explore P62701  Go to UniProtKB:  P62701
PHAROS:  P62701 GTEx:  ENSG00000198034

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	BB [auth SG]	237	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62753 (Homo sapiens) Explore P62753  Go to UniProtKB:  P62753
PHAROS:  P62753 GTEx:  ENSG00000137154

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS7	CB [auth SH]	189	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62081 (Homo sapiens) Explore P62081  Go to UniProtKB:  P62081
PHAROS:  P62081 GTEx:  ENSG00000171863

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	DB [auth SI]	206	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62241 (Homo sapiens) Explore P62241  Go to UniProtKB:  P62241
PHAROS:  P62241 GTEx:  ENSG00000142937

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9	EB [auth SJ]	185	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46781 (Homo sapiens) Explore P46781  Go to UniProtKB:  P46781
PHAROS:  P46781 GTEx:  ENSG00000170889

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11	FB [auth SL]	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62280 (Homo sapiens) Explore P62280  Go to UniProtKB:  P62280
PHAROS:  P62280 GTEx:  ENSG00000142534

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	GB [auth SN]	150	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62277 (Homo sapiens) Explore P62277  Go to UniProtKB:  P62277
PHAROS:  P62277 GTEx:  ENSG00000110700

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS11	HB [auth SO]	140	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62263 (Homo sapiens) Explore P62263  Go to UniProtKB:  P62263
PHAROS:  P62263 GTEx:  ENSG00000164587

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS21	IB [auth SV]	83	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63220 (Homo sapiens) Explore P63220  Go to UniProtKB:  P63220
PHAROS:  P63220 GTEx:  ENSG00000171858

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15a	JB [auth SW]	129	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62244 (Homo sapiens) Explore P62244  Go to UniProtKB:  P62244
PHAROS:  P62244 GTEx:  ENSG00000134419

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23	KB [auth SX]	141	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62266 (Homo sapiens) Explore P62266  Go to UniProtKB:  P62266
PHAROS:  P62266 GTEx:  ENSG00000186468

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24	LB [auth SY]	131	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62847 (Homo sapiens) Explore P62847  Go to UniProtKB:  P62847
PHAROS:  P62847 GTEx:  ENSG00000138326

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	MB [auth Sa]	102	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62854 (Homo sapiens) Explore P62854  Go to UniProtKB:  P62854
PHAROS:  P62854 GTEx:  ENSG00000197728

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS27	NB [auth Sb]	83	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42677 (Homo sapiens) Explore P42677  Go to UniProtKB:  P42677
PHAROS:  P42677 GTEx:  ENSG00000177954

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS30	OB [auth Se]	58	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62861 (Homo sapiens) Explore P62861  Go to UniProtKB:  P62861
PHAROS:  P62861 GTEx:  ENSG00000149806

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS17	QB [auth SR]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P08708 (Homo sapiens) Explore P08708  Go to UniProtKB:  P08708
PHAROS:  P08708 GTEx:  ENSG00000182774

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS3	RB [auth SD]	227	Homo sapiens	Mutation(s): 0  EC: 4.2.99.18
UniProt & NIH Common Fund Data Resources
Find proteins for P23396 (Homo sapiens) Explore P23396  Go to UniProtKB:  P23396
PHAROS:  P23396 GTEx:  ENSG00000149273

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	SB [auth SF]	189	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46782 (Homo sapiens) Explore P46782  Go to UniProtKB:  P46782
PHAROS:  P46782 GTEx:  ENSG00000083845

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10	TB [auth SK]	98	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46783 (Homo sapiens) Explore P46783  Go to UniProtKB:  P46783
PHAROS:  P46783 GTEx:  ENSG00000124614

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS12	UB [auth SM]	122	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P25398 (Homo sapiens) Explore P25398  Go to UniProtKB:  P25398
PHAROS:  P25398 GTEx:  ENSG00000112306

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS19	VB [auth SP]	121	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62841 (Homo sapiens) Explore P62841  Go to UniProtKB:  P62841
PHAROS:  P62841 GTEx:  ENSG00000115268

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS9	WB [auth SQ]	144	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62249 (Homo sapiens) Explore P62249  Go to UniProtKB:  P62249
PHAROS:  P62249 GTEx:  ENSG00000105193

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18	XB [auth SS]	145	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62269 (Homo sapiens) Explore P62269  Go to UniProtKB:  P62269
PHAROS:  P62269 GTEx:  ENSG00000231500

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19	YB [auth ST]	143	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P39019 (Homo sapiens) Explore P39019  Go to UniProtKB:  P39019
PHAROS:  P39019 GTEx:  ENSG00000105372

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	ZB [auth SU]	104	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P60866 (Homo sapiens) Explore P60866  Go to UniProtKB:  P60866
PHAROS:  P60866 GTEx:  ENSG00000008988

Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS25	AC [auth SZ]	75	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62851 (Homo sapiens) Explore P62851  Go to UniProtKB:  P62851
PHAROS:  P62851 GTEx:  ENSG00000118181

Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28	BC [auth Sc]	64	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62857 (Homo sapiens) Explore P62857  Go to UniProtKB:  P62857
PHAROS:  P62857 GTEx:  ENSG00000233927

Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29	CC [auth Sd]	55	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62273 (Homo sapiens) Explore P62273  Go to UniProtKB:  P62273
PHAROS:  P62273 GTEx:  ENSG00000213741

Entity ID: 82
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S27a	DC [auth Sf]	67	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62979 (Homo sapiens) Explore P62979  Go to UniProtKB:  P62979
PHAROS:  P62979 GTEx:  ENSG00000143947

Entity ID: 83
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor of activated protein C kinase 1	EC [auth Sg]	313	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63244 (Homo sapiens) Explore P63244  Go to UniProtKB:  P63244
PHAROS:  P63244 GTEx:  ENSG00000204628

Entity ID: 85
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 2	GC [auth CB]	856	Homo sapiens	Mutation(s): 0  EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P13639 (Homo sapiens) Explore P13639  Go to UniProtKB:  P13639
PHAROS:  P13639 GTEx:  ENSG00000167658

Entity ID: 86
Molecule	Chains	Sequence Length	Organism	Details	Image
Proliferation-associated protein 2G4	HC [auth CA]	356	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UQ80 (Homo sapiens) Explore Q9UQ80  Go to UniProtKB:  Q9UQ80
PHAROS:  Q9UQ80 GTEx:  ENSG00000170515

Entity ID: 3
Molecule	Chains	Length	Organism	Image
28S rRNA	C [auth L5]	5,070	Homo sapiens

Entity ID: 4
Molecule	Chains	Length	Organism	Image
5S rRNA	D [auth L7]	120	Homo sapiens

Entity ID: 5
Molecule	Chains	Length	Organism	Image
5.8S rRNA	E [auth L8]	156	Homo sapiens

Entity ID: 68
Molecule	Chains	Length	Organism	Image
18S rRNA	PB [auth S2]	1,740	Homo sapiens

Entity ID: 84
Molecule	Chains	Length	Organism	Image
E site tRNA	FC [auth Et]	75	Homo sapiens

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SPM (Subject of Investigation/LOI)	KI [auth L5], OI [auth L5], OJ [auth L5], PI [auth L5], RJ [auth L5], SI [auth L5], SJ [auth L5]	SPERMINE C10 H26 N4 PFNFFQXMRSDOHW-UHFFFAOYSA-N
SPD (Subject of Investigation/LOI)	EK [auth LN], IJ [auth L5], JJ [auth L5], KJ [auth L5], LJ [auth L5], MI [auth L5], MJ [auth L5], NJ [auth L5], PJ [auth L5], QJ [auth L5]	SPERMIDINE C7 H19 N3 ATHGHQPFGPMSJY-UHFFFAOYSA-N
ZN (Subject of Investigation/LOI)	IK [auth Lg], JK [auth Lj], KK [auth Lm], LK [auth Lo], MK [auth Lp], OK [auth Sa]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG (Subject of Investigation/LOI)	AD [auth L5], AE [auth L5], AF [auth L5], AG [auth L5], AH [auth L5], AI [auth L5], AJ [auth L5], AK [auth L8], AL [auth S2], BD [auth L5], BE [auth L5], BF [auth L5], BG [auth L5], BH [auth L5], BI [auth L5], BJ [auth L5], BK [auth L8], BL [auth S2], CD [auth L5], CE [auth L5], CF [auth L5], CG [auth L5], CH [auth L5], CI [auth L5], CJ [auth L5], CK [auth LA], CL [auth S2], DD [auth L5], DE [auth L5], DF [auth L5], DG [auth L5], DH [auth L5], DI [auth L5], DJ [auth L5], DK [auth LI], DL [auth S2], ED [auth L5], EE [auth L5], EF [auth L5], EG [auth L5], EH [auth L5], EI [auth L5], EJ [auth L5], EL [auth S2], FD [auth L5], FE [auth L5], FF [auth L5], FG [auth L5], FH [auth L5], FI [auth L5], FJ [auth L5], FK [auth LP], FL [auth S2], GD [auth L5], GE [auth L5], GF [auth L5], GG [auth L5], GH [auth L5], GI [auth L5], GJ [auth L5], GK [auth LV], GL [auth S2], HD [auth L5], HE [auth L5], HF [auth L5], HG [auth L5], HH [auth L5], HI [auth L5], HJ [auth L5], HK [auth Le], HL [auth S2], IC [auth L5], ID [auth L5], IE [auth L5], IF [auth L5], IG [auth L5], IH [auth L5], II [auth L5], IL [auth S2], JC [auth L5], JD [auth L5], JE [auth L5], JF [auth L5], JG [auth L5], JH [auth L5], JI [auth L5], JL [auth S2], KC [auth L5], KD [auth L5], KE [auth L5], KF [auth L5], KG [auth L5], KH [auth L5], KL [auth S2], LC [auth L5], LD [auth L5], LE [auth L5], LF [auth L5], LG [auth L5], LH [auth L5], LI [auth L5], LL [auth S2], MC [auth L5], MD [auth L5], ME [auth L5], MF [auth L5], MG [auth L5], MH [auth L5], ML [auth S2], NC [auth L5], ND [auth L5], NE [auth L5], NF [auth L5], NG [auth L5], NH [auth L5], NI [auth L5], NK [auth SG], NL [auth S2], OC [auth L5], OD [auth L5], OE [auth L5], OF [auth L5], OG [auth L5], OH [auth L5], OL [auth S2], PC [auth L5], PD [auth L5], PE [auth L5], PF [auth L5], PG [auth L5], PH [auth L5], PK [auth S2], QC [auth L5], QD [auth L5], QE [auth L5], QF [auth L5], QG [auth L5], QH [auth L5], QI [auth L5], QK [auth S2], RC [auth L5], RD [auth L5], RE [auth L5], RF [auth L5], RG [auth L5], RH [auth L5], RI [auth L5], RK [auth S2], SC [auth L5], SD [auth L5], SE [auth L5], SF [auth L5], SG [auth L5], SH [auth L5], SK [auth S2], TC [auth L5], TD [auth L5], TE [auth L5], TF [auth L5], TG [auth L5], TH [auth L5], TI [auth L5], TJ [auth L5], TK [auth S2], UC [auth L5], UD [auth L5], UE [auth L5], UF [auth L5], UG [auth L5], UH [auth L5], UI [auth L5], UJ [auth L7], UK [auth S2], VC [auth L5], VD [auth L5], VE [auth L5], VF [auth L5], VG [auth L5], VH [auth L5], VI [auth L5], VJ [auth L7], VK [auth S2], WC [auth L5], WD [auth L5], WE [auth L5], WF [auth L5], WG [auth L5], WH [auth L5], WI [auth L5], WJ [auth L7], WK [auth S2], XC [auth L5], XD [auth L5], XE [auth L5], XF [auth L5], XG [auth L5], XH [auth L5], XI [auth L5], XJ [auth L8], XK [auth S2], YC [auth L5], YD [auth L5], YE [auth L5], YF [auth L5], YG [auth L5], YH [auth L5], YI [auth L5], YJ [auth L8], YK [auth S2], ZC [auth L5], ZD [auth L5], ZE [auth L5], ZF [auth L5], ZG [auth L5], ZH [auth L5], ZI [auth L5], ZJ [auth L8], ZK [auth S2]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.59 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:
RECONSTRUCTION	cryoSPARC

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-12-24 
Deposition Author(s): Wei, Z., Yong, X.
• This entry supersedes: 9B0H

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-12-24
  Type: Initial release