9OXK | pdb_00009oxk

CryoEM structure of FlaB filament from Shewanella oneidensis


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Curvature Generation and Engineering Principles from Shewanella oneidensis Multi-flagellin Flagellum.

Lou, Q.Fan, H.Liu, Y.Miller, J.F.Huang, Y.Zhou, Z.H.

(2025) ACS Nano 19: 25682-25696

  • DOI: https://doi.org/10.1021/acsnano.5c02744
  • Primary Citation Related Structures: 
    9OXJ, 9OXK

  • PubMed Abstract: 

    Motility driven by nanoscale flagella is vital to microbial survival and spread in fluid and structured environments. The absence of native flagellum structures, however, has limited our understanding of the mechanisms of microbial motility, hindering efforts to engineer microbe-based microbots for applications. Here, by cryogenic electron tomography (cryoET) and microscopy (cryoEM), we determined the structural basis of motility driven by the single flagellum anchored to one pole of Shewanella oneidensis MR-1 ( S. oneidensis ), an electrogenic bacterium commonly used in biotechnology. The structures of the curved flagellum, representing the conformation during motion, are captured, allowing delineation of molecular interactions among the subunits of its three components─filament, hook, and hook-filament junction. The structures of the filament, i.e., the propeller, reveal varying compositions of the flagellin isoforms FlaA and FlaB throughout the filament. Distinct inter-subunit interactions along the 5-start direction are identified at residues 129 and 134, which are the major determinants of functional differences in motility for the two isoforms. The hook─the universal joint─has a significantly larger curvature than that of the filament, despite both containing 11 curvature-defining conformers of their subunits. Transition between the propeller and the universal joint is mediated by the hook-filament junction, composed of 11 subunits of FlgK and FlgL, reconciling the incompatibility between the filament and the hook. Correlating these compositional and structural transitions with varying levels of curvature in flagellar segments reveals the molecular mechanism enabling propulsive motility. Mechanistic understanding from S. oneidensis could suggest engineering principles for nanoscale biomimetic systems.


  • Organizational Affiliation
    • Department of Materials Science and Engineering, University of California, Los Angeles (UCLA) Los Angeles, California 90095, United States.

Macromolecule Content 

  • Total Structure Weight: 907.67 kDa 
  • Atom Count: 63,296 
  • Modeled Residue Count: 8,672 
  • Deposited Residue Count: 8,672 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellin271Shewanella oneidensis MR-1Mutation(s): 0 
UniProt
Find proteins for Q8ECA6 (Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1))
Explore Q8ECA6 
Go to UniProtKB:  Q8ECA6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ECA6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM071940
National Institutes of Health/Office of the DirectorUnited States1S10OD018111
National Science Foundation (NSF, United States)United StatesDBI-1338135
National Science Foundation (NSF, United States)United StatesDMR-1548924

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release
  • Version 1.1: 2025-07-23
    Changes: Data collection, Database references
  • Version 1.2: 2025-08-06
    Changes: Data collection, Database references